Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8h22
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    26   3.4  
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    25   4.5  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    25   7.8  

>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 380 HAFSGHRNLSEIIRILVPTRL 442
           H F GH ++   + ILVP+RL
Sbjct: 425 HIFRGHISIIRCLEILVPSRL 445


>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +1

Query: 352 YMDDLTRSTSCI*WSPESI 408
           Y++D TRS +C+ +SP++I
Sbjct: 185 YINDSTRSIACLLYSPKTI 203


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 355 YSAIKNT*LCKLGIVSDVHISVPAEYLP-VSFKLGQKL*T 239
           +  + N  L  LG+ SD H+S   +Y P V  KL + + T
Sbjct: 245 FDELSNAQLPLLGLFSDYHLSYDIDYQPEVQPKLSEMVET 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,811,528
Number of Sequences: 5004
Number of extensions: 33800
Number of successful extensions: 54
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)