Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8h13
         (546 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0797 - 23230441-23230757,23230922-23231069,23231352-232325...    31   0.79 
04_04_1675 - 35280705-35281493,35281544-35281795                       29   3.2  
01_05_0573 + 23359968-23361044,23361112-23361255,23361458-23361841     28   5.6  
08_02_0269 + 15087481-15087893,15087978-15088074,15089068-150891...    27   7.4  
02_05_1153 - 34501778-34502961,34503052-34503219,34503306-34504263     27   9.8  
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336...    27   9.8  

>12_02_0797 -
           23230441-23230757,23230922-23231069,23231352-23232562,
           23232639-23232894,23234073-23234309
          Length = 722

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 21/66 (31%), Positives = 30/66 (45%)
 Frame = +1

Query: 310 SRTLGGPVPDMNDHEAMQRFFLQQIQXXXXXXXXXXXXXXVEHLGQAVAVCGQTEQLLSV 489
           S+T G  VP  N  EA+    L  I               +EHL  A+++CGQT  L   
Sbjct: 262 SQTEGSYVPKNNLEEAI--LLLMIILKKWYLGKTHWDPSVMEHLTFALSLCGQTSVLAKH 319

Query: 490 LQQTMP 507
           L++ +P
Sbjct: 320 LEEVLP 325


>04_04_1675 - 35280705-35281493,35281544-35281795
          Length = 346

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 217 CVYFDQQ-RRKDPLFKKKLRERRLNAQQNASRSRTLGGPVPDMNDH 351
           C +FD + RR+D  F KKL    LN  ++ +R + L    PD  D+
Sbjct: 214 CAFFDDRARRQDDTFSKKL---ALNCTKDPNRLQNLDVITPDAFDN 256


>01_05_0573 + 23359968-23361044,23361112-23361255,23361458-23361841
          Length = 534

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 335 GTGPPRVRDLEAFCCAFSLRSLNFFLNSGSLRLCWSKY 222
           G G P +R+L  +C A   R L+F L +  +  C   Y
Sbjct: 224 GAGFPHLRELGLYCVAMEDRDLDFVLANSPVLECLGIY 261


>08_02_0269 +
           15087481-15087893,15087978-15088074,15089068-15089112,
           15089281-15089492,15090809-15090911,15091002-15091097,
           15091405-15091473,15093341-15093588,15093640-15093759,
           15093847-15094284,15094503-15094620,15095262-15095303,
           15097099-15097161,15097365-15097475,15097730-15097801,
           15097875-15097993,15099682-15099745,15100238-15101860
          Length = 1350

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -1

Query: 447 LPEMFDSSFKITCSQQLFAELNL--LQEKSLHSFMIVHVWNRSTEGTRPR 304
           LP  FD + +++CS   + ELNL    + + H F  V  W    +  RP+
Sbjct: 33  LPIKFDENEEVSCSD--YKELNLRGFTDNNRHVFKKVIAWRVDLDCQRPK 80


>02_05_1153 - 34501778-34502961,34503052-34503219,34503306-34504263
          Length = 769

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +1

Query: 163 RTTLGIAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRERR---LNAQQNASRSRTLGG 327
           +   G++VG+   LF+ + +Y   Q+RK    K++  E+    L  QQ +S   T GG
Sbjct: 372 KVVTGVSVGVFLLLFMLFWLYLGLQKRKLIRTKQRFFEQNGGVLLQQQMSSYGGTSGG 429


>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
            3366324-3366449,3367056-3367262,3367399-3367492,
            3367575-3367621,3367705-3368157,3368261-3368560,
            3368656-3369114,3369189-3369410,3369659-3369890,
            3370051-3370422,3371210-3371322,3371682-3371903,
            3371977-3372180,3372308-3372572,3373123-3373311,
            3373441-3373768,3373843-3374248,3374339-3374648,
            3375677-3375837,3376825-3376998,3377265-3377609,
            3377713-3377754,3378585-3378734,3378847-3379002,
            3379088-3379540,3379651-3379966,3380402-3380839,
            3381475-3381697,3383538-3383852,3384033-3384095,
            3384699-3384903,3385362-3385425,3386014-3386204
          Length = 3048

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 401  CWLQVILKLESNISGRLWLFVDRLNNCLVYFSKLCQLQSSICFLRNC 541
            CWL+V   LE+++ G    F +    CL    K   +  SI     C
Sbjct: 1007 CWLRVESFLENSMMGLFSFFTESGKGCLAMLGKDALIFESISQKHQC 1053


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,219,481
Number of Sequences: 37544
Number of extensions: 262181
Number of successful extensions: 623
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)