Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8h12
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    29   0.41 
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    25   6.7  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    24   8.8  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    24   8.8  

>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 28.7 bits (61), Expect = 0.41
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +3

Query: 60  SVKFFNLSRKYL---KMKLLIFFGVLAFVAIELIHSKPVAEETKKDETTPPVTVTEGAAR 230
           S+   +L+  YL   K+ L    GV+  +A   +++KP ++ +    T  P+T  + AA+
Sbjct: 288 SIIISSLASVYLMDFKISLTFLIGVMLVIAATFLYTKPESKPSPSRGTYIPMTTQDAAAK 347


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 148 SSIATKARTPKKINSFIFKYFRDRLKNF 65
           SSI TK R P K++S+    F ++ + F
Sbjct: 182 SSILTKPRNPSKLDSYTHLSFYEKRELF 209


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 144 ELIHSKPVAEETKKDETTPPVTVT 215
           EL     VAE++K+ + T P TVT
Sbjct: 495 ELYRQSAVAEKSKRVKDTSPYTVT 518


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -3

Query: 422  VPFYFIY*ILLC--NLTNLKQVHFTLISFCLK 333
            VPF  +Y + LC   +T  K +H  L  FC K
Sbjct: 960  VPFQLVYGVALCTQTVTTAKALH--LARFCTK 989


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,434,952
Number of Sequences: 5004
Number of extensions: 21747
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)