Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8h12
         (436 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0040 + 40672633-40673369,40673412-40673558,40675019-406752...    27   6.6  
07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588...    27   8.7  
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718     27   8.7  
08_02_1624 - 28334067-28335851                                         23   9.6  

>01_07_0040 +
           40672633-40673369,40673412-40673558,40675019-40675223,
           40676730-40676816
          Length = 391

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 75  NLSRKYLKMKLLIFFGVLAFVAIELIHSKPVAEETKKDETTPP 203
           N ++  L + LL+FF  L+    + +HS+P++  T   +  PP
Sbjct: 5   NPTKTLLLLLLLVFF--LSLACSQPLHSEPMSTTTTATQPAPP 45


>07_01_0766 -
           5885207-5885791,5885874-5886224,5886252-5886269,
           5886339-5886541,5886632-5886890,5887052-5887264,
           5887357-5887482,5887590-5887727,5887817-5888162,
           5888254-5888520,5888983-5889172,5889264-5889363,
           5889444-5889694,5889990-5890182,5890313-5890336
          Length = 1087

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 272 ERVSNGCHGEGRRCQIC 322
           + V +G HG G+ CQIC
Sbjct: 6   DAVKSGRHGSGQACQIC 22


>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
          Length = 1412

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 150  IHSKPVAEETKKDETTPPVTVTE 218
            +    +AEET K ETTP V V E
Sbjct: 1066 VEENTLAEETAKGETTPEVHVEE 1088


>08_02_1624 - 28334067-28335851
          Length = 594

 Score = 22.6 bits (46), Expect(2) = 9.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 227 CGPLCNCHGWC 195
           CGPLC C   C
Sbjct: 424 CGPLCGCPMTC 434



 Score = 22.2 bits (45), Expect(2) = 9.6
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -3

Query: 248 GCYSGSSCGPLCNC 207
           GC+    CG  C+C
Sbjct: 383 GCHCAELCGSRCSC 396


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,032,618
Number of Sequences: 37544
Number of extensions: 136108
Number of successful extensions: 364
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)