Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8h12
         (436 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM079745-1|CAL03891.1|  101|Homo sapiens immunoglobulin heavy ch...    29   6.9  
BC036788-1|AAH36788.2|  494|Homo sapiens integrin, beta-like 1 (...    29   9.1  
AL355807-1|CAI14550.1|  494|Homo sapiens integrin, beta-like 1 (...    29   9.1  
AL160153-1|CAH73400.1|  494|Homo sapiens integrin, beta-like 1 (...    29   9.1  
AL139800-1|CAH71455.1|  494|Homo sapiens integrin, beta-like 1 (...    29   9.1  
AF072752-1|AAD17666.1|  494|Homo sapiens ten integrin EGF-like r...    29   9.1  
AE014302-1|AAN16024.1|  494|Homo sapiens ITGBL1 protein.               29   9.1  

>AM079745-1|CAL03891.1|  101|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 101

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -1

Query: 163 GLEWISSIATKARTPKKINSF--IFKYFRDRLKN 68
           GLEW+S+I    RT    NS    F  FRD  KN
Sbjct: 47  GLEWVSTITYDGRTTYYANSVKGRFTIFRDNSKN 80


>BC036788-1|AAH36788.2|  494|Homo sapiens integrin, beta-like 1
           (with EGF-like repeat domains) protein.
          Length = 494

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 236 GSSCGPLCNCHGWCC 192
           G   GPLC CH W C
Sbjct: 82  GMFFGPLCECHEWVC 96


>AL355807-1|CAI14550.1|  494|Homo sapiens integrin, beta-like 1
           (with EGF-like repeat domains) protein.
          Length = 494

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 236 GSSCGPLCNCHGWCC 192
           G   GPLC CH W C
Sbjct: 82  GMFFGPLCECHEWVC 96


>AL160153-1|CAH73400.1|  494|Homo sapiens integrin, beta-like 1
           (with EGF-like repeat domains) protein.
          Length = 494

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 236 GSSCGPLCNCHGWCC 192
           G   GPLC CH W C
Sbjct: 82  GMFFGPLCECHEWVC 96


>AL139800-1|CAH71455.1|  494|Homo sapiens integrin, beta-like 1
           (with EGF-like repeat domains) protein.
          Length = 494

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 236 GSSCGPLCNCHGWCC 192
           G   GPLC CH W C
Sbjct: 82  GMFFGPLCECHEWVC 96


>AF072752-1|AAD17666.1|  494|Homo sapiens ten integrin EGF-like
           repeat domains protein precursor protein.
          Length = 494

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 236 GSSCGPLCNCHGWCC 192
           G   GPLC CH W C
Sbjct: 82  GMFFGPLCECHEWVC 96


>AE014302-1|AAN16024.1|  494|Homo sapiens ITGBL1 protein.
          Length = 494

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 236 GSSCGPLCNCHGWCC 192
           G   GPLC CH W C
Sbjct: 82  GMFFGPLCECHEWVC 96


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,803,591
Number of Sequences: 237096
Number of extensions: 764373
Number of successful extensions: 3462
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3462
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3487985734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)