Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8h12
         (436 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70755-5|CAA94784.1|   75|Caenorhabditis elegans Hypothetical pr...    30   0.83 
U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human nie...    28   3.4  
AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical ...    27   4.4  
Z49911-2|CAA90130.1|  681|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>Z70755-5|CAA94784.1|   75|Caenorhabditis elegans Hypothetical
           protein K06A4.6 protein.
          Length = 75

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 242 YSGSSCGPLCNCHGWC 195
           YSG+SC  + +C GWC
Sbjct: 14  YSGNSCFSISSCQGWC 29


>U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human
           niemann pick c disease)related protein 1 protein.
          Length = 1383

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -3

Query: 260 SSFIGCYSGSSCGPLCNCHGWCC---FILLSFFGN 165
           ++ I    G + G  CN HG  C   F++L+F G+
Sbjct: 257 ANLIDLDDGKTSGQTCNVHGIACLNIFVMLAFIGS 291


>AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical
           protein F09G2.9 protein.
          Length = 415

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 129 AFVAIELIHSKPVAEETKKDETTPPVT 209
           A VA+E    +PV EE K+D   P VT
Sbjct: 96  AEVAVEAAKEEPVVEEKKEDAPEPVVT 122


>Z49911-2|CAA90130.1|  681|Caenorhabditis elegans Hypothetical
           protein M28.2 protein.
          Length = 681

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +3

Query: 99  MKLLIFFGVLAFVAIELIHSKP---VAEETKKDETTPPVT 209
           MKL +FFG+++F +I    + P    A+  K    T P+T
Sbjct: 1   MKLCLFFGIISFTSIAFCANSPKPQPAQCPKSSLETKPMT 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,002,313
Number of Sequences: 27780
Number of extensions: 127783
Number of successful extensions: 306
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)