Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8h08
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0203 + 1459600-1460010                                           30   1.4  
03_03_0117 - 14583102-14583186,14585202-14585336,14585440-145856...    28   5.5  
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128...    28   5.5  
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134...    28   7.3  
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495...    27   9.7  
04_03_0988 - 21469811-21469831,21470823-21471047,21471327-214716...    27   9.7  
01_05_0359 + 21350580-21350829,21350990-21351064,21351156-213512...    27   9.7  

>05_01_0203 + 1459600-1460010
          Length = 136

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +1

Query: 331 ATRRTGRHYSVSCPSLVTELKKSCRPSDHMGPFGTRAVSCVSIKAP 468
           A RRT + +S+S      + K  CRP    G    R V+C  IK P
Sbjct: 4   AWRRTSK-FSISQRDFARKRKYLCRPMPPYGTLEYRTVTCSMIKVP 48


>03_03_0117 -
           14583102-14583186,14585202-14585336,14585440-14585604,
           14586168-14586245,14586796-14586941
          Length = 202

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 337 RRTGRHYSVSCPSLVTELKKSCRPSDHMGPFG 432
           R  GR   +    LV  L++ CRP D   PFG
Sbjct: 27  RYGGRDRDLPTSLLVRNLRRDCRPDDLRRPFG 58


>02_04_0587 +
           24110333-24110584,24111193-24111261,24112347-24112850,
           24113094-24113336
          Length = 355

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 634 SHSPMDSRTGRTGTDTAHSSGAYQPA*STTSL 539
           SHS  DS TG TG D A ++    P+   T+L
Sbjct: 104 SHSKEDSETGETGADDAAAATEETPSVIVTAL 135


>07_03_1389 +
           26212117-26212119,26212721-26212875,26213402-26213479,
           26214211-26214375,26214453-26214554,26214661-26214786,
           26215454-26215490
          Length = 221

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 337 RRTGRHYSVSCPSLVTELKKSCRPSDHMGPFG 432
           R  GR   +    LV  L++ CRP D   PFG
Sbjct: 31  RYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFG 62


>09_04_0361 -
           16948740-16948860,16948951-16949018,16949424-16949510,
           16949626-16949694,16949786-16949854,16949944-16950765
          Length = 411

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +3

Query: 195 RGHQEKHRAVIGCGEESRPAGE 260
           RGH E HR   G GE  R AGE
Sbjct: 53  RGHAEHHRNGGGGGEHRREAGE 74


>04_03_0988 -
           21469811-21469831,21470823-21471047,21471327-21471634,
           21471864-21472234,21472327-21472430,21473086-21473325
          Length = 422

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 293 HKRRYW*LRAADERLDELVATTACRVPALLQSSRRVADQAITWAPLE 433
           +K+R W   A D   D +V     +VPAL+    +  +Q++ + P E
Sbjct: 192 YKKRAWFAVAKDFSEDFMVTYDFDKVPALVSLHPKYKEQSVFYGPFE 238


>01_05_0359 +
           21350580-21350829,21350990-21351064,21351156-21351236,
           21352633-21352830,21352930-21353019,21353096-21353253,
           21353350-21353472,21354989-21355096,21355530-21355826
          Length = 459

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 66  QNFQVTNRRVNKINVNNGFSSEEGCFDEKCVVLKMHQGASFDFRGHQ 206
           QN  +  + + + N+    +  +     + ++ K+H GA FD RGHQ
Sbjct: 175 QNGTILKKTLRRGNLEGQHTENQAVVGVR-LIGKLHDGAVFDQRGHQ 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,947,026
Number of Sequences: 37544
Number of extensions: 363635
Number of successful extensions: 941
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)