Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8h03
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    26   0.35 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.4  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 12/39 (30%), Positives = 26/39 (66%)
 Frame = +3

Query: 354 KDKELMEEFLKKVLEQQASALKKRKIEQLSQKIDIIVAG 470
           KD+++M+   +K++E++    +K K + L+  ++IIV G
Sbjct: 451 KDRKIMDMVREKIIEEK----RKNKNKNLTPAVNIIVKG 485


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 234 NDFLGLPIALSSEETALLVEKRICELHEMP 323
           ++F   P+    E+T  +   + CELH  P
Sbjct: 366 SNFAMKPLVRQPEDTMSVDRMQHCELHMQP 395


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 234 NDFLGLPIALSSEETALLVEKRICELHEMP 323
           ++F   P+    E+T  +   + CELH  P
Sbjct: 366 SNFAMKPLVRQPEDTMSVDRMQHCELHMQP 395


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +3

Query: 432 EQLSQKIDIIVAGKKKNLINKGMSDANIDK 521
           ++ S +   + AG+  NL+    S A ++K
Sbjct: 5   QETSNEDSYLSAGRPSNLLRTSFSSAKLEK 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,823
Number of Sequences: 438
Number of extensions: 2901
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)