Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8h02
(626 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr... 88 1e-18
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 30 0.31
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa... 29 0.42
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 27 2.2
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 26 3.9
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ... 26 3.9
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 5.1
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 26 5.1
SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar... 25 6.8
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 6.8
>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 308
Score = 87.8 bits (208), Expect = 1e-18
Identities = 37/95 (38%), Positives = 60/95 (63%)
Frame = +3
Query: 291 SRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNF 470
SR ++LAW+N +IE+ G A Q D ++ +P+K++ F+ N E++YI N+
Sbjct: 4 SRQELLAWINQVTSLGLTRIEDCGKGYAMIQIFDSIYQ-DIPLKKVNFECNNEYQYINNW 62
Query: 471 KILQAGFKKMGVDKIVPIDKLVKGRFQDNFEFLQW 575
K+LQ F K G+DK+V ++L + + QDN EF+QW
Sbjct: 63 KVLQQVFLKKGIDKVVDPERLSRCKMQDNLEFVQW 97
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 29.9 bits (64), Expect = 0.31
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -1
Query: 185 NKFAV*DKLSNLLEFLSKTLTSFFFDHHIHFLFYNLYSSRYLRP 54
NKFA + + +FL KT T F H+ +L Y YSS + RP
Sbjct: 705 NKFAEDPQAKFISQFLEKTSTE--FQIHLWYLLYQAYSSAH-RP 745
>SPBC21C3.18 |spo4||serine/threonine protein kinase
Spo4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 29.5 bits (63), Expect = 0.42
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 414 PMKRIKFKTNLEHEYIQNFKILQAGFK 494
P KR+K KT L+HE+ + ++GF+
Sbjct: 388 PSKRVKAKTALQHEFFNACGVTRSGFE 414
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 109 SKKNEVSVLDKNSNKFDNLSHTANLFR 189
+ +NE + + K SN DNL+ ++ LFR
Sbjct: 263 NSQNEHTEVQKKSNSIDNLTPSSELFR 289
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 26.2 bits (55), Expect = 3.9
Identities = 9/37 (24%), Positives = 25/37 (67%)
Frame = +2
Query: 275 YVRKSIAA*YASVGE*LSPVKLCEDRRVVYRCRLLPV 385
Y++ ++ ++S+ + SP+ + E+++ ++R +LPV
Sbjct: 58 YLKNRVSRSWSSIDDAPSPLDIPEEQKALFRQNILPV 94
>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 161 LSNLLEFLSKTLTSFFFDHHIHFLFYNLY 75
L+NLLE L ++ +F H+HF+ Y
Sbjct: 345 LNNLLEHLHQSFFFYFILDHLHFISIGNY 373
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 429 KFKTNLEHEYIQNFKILQAGFK 494
K TNLE+EY +KI+Q FK
Sbjct: 748 KSSTNLENEYQTPWKIIQNPFK 769
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 431 FDSFHWYTAREQHVHELAIGGTCTQLF 351
FD WYT R + + L+I QLF
Sbjct: 109 FDDMRWYTRRRKSIPNLSIKLYAFQLF 135
>SPCC970.06 |||cargo receptor for soluble proteins
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 259 TFTAIFTMYQPLMKKFLTV 203
TF A FT Y PL+ +FL V
Sbjct: 45 TFMAPFTPYMPLLGRFLIV 63
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 409 VYQ*KESNLRQIWNMNIYRTLKYYKLVL 492
++Q S LR I N+N+Y+ + KL++
Sbjct: 654 IFQIHASQLRYIDNLNVYKNWAFRKLLI 681
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,090
Number of Sequences: 5004
Number of extensions: 56581
Number of successful extensions: 143
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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