Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8h01
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 28 1.3
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 27 2.3
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 27 2.3
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces... 26 4.0
SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr 3... 26 4.0
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 26 5.3
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 26 5.3
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 25 9.3
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 25 9.3
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 25 9.3
>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1466
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = -3
Query: 414 TYPHSGNVHVYWSRSHLLIQTISIQVDALTLKRIVSTWLNIFSRNSNLSWLVNNIHRIRE 235
++P NVH + + L QT S+ + T + S W +I NSN ++ + ++ +
Sbjct: 940 SFPAYLNVHPKQAYTILDSQTHSLFIHVTTNTHLGSEWGDILKSNSNGTYFMTSLANVNR 999
Query: 234 QS 229
S
Sbjct: 1000 DS 1001
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -2
Query: 628 RQPDTGRTIWLLRSVSDFFELTVYFCLIRWRHTNP 524
RQP + R W+ + F +LT+++ + NP
Sbjct: 311 RQPSSSRNSWIFTLLLTFTQLTIFYLSLNCLIENP 345
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +1
Query: 424 NSNWVRVEKCYFDPRNVSLDTMLLFHDLTISGNVDLYDASELDRNIPSTQRNRRHYAEAR 603
+SN + E D + L + ++ L G+V Y A N+P Q +RR+Y A
Sbjct: 276 SSNSLTYEPALTDHKPQYL-VLCVYRSLIYIGDVHRYLAEVRSPNVPDYQVSRRYYVMAA 334
Query: 604 SYDP 615
+ P
Sbjct: 335 NVAP 338
>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 26.2 bits (55), Expect = 4.0
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -3
Query: 393 VHVYWSRSHLLIQTISIQVDALTLKRIVST-WLNIFSRNSNLSWLVNNIHRIREQSKMPF 217
V +YW S + QT+ + A+ LK+ + L I S+ L+++ + ++I +PF
Sbjct: 132 VKMYWRFSSVHFQTLRL-ASAIQLKKFIFVKILGIVSKTYCLAFVPVSFYQISRGLLLPF 190
Query: 216 T 214
T
Sbjct: 191 T 191
>SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 188
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 473 TFLGSK*HFSTRTQLLFCGRRTLILVTYMSI 381
T+L + H S+ +Q+LF G R L +T +I
Sbjct: 136 TYLSNNSHVSSASQILFIGDRLLTDITLANI 166
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 442 VEKCYFDPRNVSLDTMLLFHDLTIS-GNVDLYDASELDRNIPSTQRNRRHY 591
VEK YF +NV +D + D + S Y S DR S++ + R Y
Sbjct: 298 VEKAYFKMQNVLIDDSRIHVDFSQSVARYRQYYNSNRDRKRSSSRSDDREY 348
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -3
Query: 372 SHLLIQTISIQVDALTLKRIVSTWLNIFSRNSNLSWLVNN 253
S L QT+S+Q L +K + ++ N +S+ +N + ++ N
Sbjct: 83 SELSSQTLSVQSQLLKVKNSIDSYKNEWSKKTNDAQILLN 122
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 25.0 bits (52), Expect = 9.3
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 379 PIDMYVTRMRVRLPQNSNWVRVEKCYFDPRNVSLDTMLLFHDLTISGNVDLYDASELDR 555
P+ M VT R+ + N VR ++D LDT +L + I+GN + + + DR
Sbjct: 438 PLSMSVTDSRIAIAYNDGNVR----FYD-----LDTQILVSQMRIAGNSAIGNPAVKDR 487
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 546 IRQKYTVNSKKSETLRRSQIVRPV 617
I Q + VNS+ S L R+Q ++PV
Sbjct: 499 IMQIHAVNSRLSNALNRTQTLQPV 522
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 113 MHRLNRSFRSFMVSITLNYLLEKK-WTDTKYVFTY 214
+HR+ R+ R V +++N++ +KK W + + Y
Sbjct: 443 LHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEY 477
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,255
Number of Sequences: 5004
Number of extensions: 58330
Number of successful extensions: 176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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