Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8g23
         (478 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb...    75   7e-15
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3...    69   5e-13
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    30   0.21 
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma...    29   0.37 
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    28   0.64 
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    27   1.1  
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p...    27   1.1  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    27   1.9  
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu...    26   3.4  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   4.5  
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    25   4.5  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   5.9  
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    25   7.9  

>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 74.5 bits (175), Expect = 7e-15
 Identities = 35/80 (43%), Positives = 52/80 (65%)
 Frame = +3

Query: 237 VLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPNEIV 416
           ++G PG+GKGTQ   I  KYG  HL+TGD+LR++V   +E  K    IM++G LV ++IV
Sbjct: 8   LVGPPGAGKGTQAPNIQKKYGIAHLATGDMLRSQVARQTELGKEAKKIMDQGGLVSDDIV 67

Query: 417 LDLLKEAILARAEESKGFLI 476
             ++K+ IL   E   GF++
Sbjct: 68  TGMIKDEILNNPECKNGFIL 87


>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 191

 Score = 68.5 bits (160), Expect = 5e-13
 Identities = 31/71 (43%), Positives = 49/71 (69%), Gaps = 2/71 (2%)
 Frame = +3

Query: 225 SIVWVLGGPGSGKGTQCDKIVAKYG-FTHLSTGDLLRAEV-KSGSERAKCLTAIMERGEL 398
           ++++VLGGPG+GKGTQCD++  K+  F H+S GD LR E  + GS+    +   ++ G++
Sbjct: 3   NVIFVLGGPGAGKGTQCDRLAEKFDKFVHISAGDCLREEQNRPGSKYGNLIKEYIKDGKI 62

Query: 399 VPNEIVLDLLK 431
           VP EI + LL+
Sbjct: 63  VPMEITISLLE 73


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 29.9 bits (64), Expect = 0.21
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +3

Query: 216 SKKSIVWVLGGPGSGKGTQCDKIVAKYGFT 305
           SK  I+ +LG  GSGK TQ  + +A+ G+T
Sbjct: 524 SKNQILVLLGETGSGKTTQITQYLAEEGYT 553


>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 193

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 204 PIDTSKKSIVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDL 326
           P +   K +  V+G  GSGK T    +  K GF ++   DL
Sbjct: 8   PTNQPYKYVFVVIGPAGSGKTTMAKAVSEKLGFEYIEGDDL 48


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 28.3 bits (60), Expect = 0.64
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 210 DTSKKSIVWVLGGPGSGKGTQCDKIVAK 293
           D+ K +I+ + GGP SGK   C++++ +
Sbjct: 4   DSVKSAIIGIAGGPFSGKTQLCEQLLER 31


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 129 KEPIVDKLPPCPLMCKSPKCKAYMAPIDTSKKSIVWVLGGPGSGKGTQCDKIVAKY 296
           ++ + D+L  C L+   PK  A+       + S++ ++G  GSGK T C K+   Y
Sbjct: 76  QKAVFDEL--CSLV--DPKVDAFTPK--KGRPSVIMMVGLQGSGKTTTCSKLALHY 125


>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 219 KKSIVWVLGGPGSGKGTQCDKIVAK 293
           ++ ++ + GGPGSGK T C  I+AK
Sbjct: 28  QRVLIGLAGGPGSGKSTLC-AILAK 51


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 204 PIDTSKKSIVWVLGGPGSGKGTQCDKIVAKY 296
           P +     IV V+G PG+GK T    +V +Y
Sbjct: 68  PDEAPPPVIVAVMGPPGTGKSTLIKSLVRRY 98


>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
           Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 319 ETCSGLKSKAARRGRNALPLLWKEASL 399
           + CS + S   R GR  +P+L K  SL
Sbjct: 19  DCCSAVASALLRHGRLTIPMLQKRTSL 45


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +3

Query: 264 GTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPNEI--VLDLLKEA 437
           G   +KI++   + + S         K    R++C   ++  GEL+PN +  + D L+  
Sbjct: 589 GVVLEKIISAVTYDNTSASYGFSDVQKINEMRSRCCFELVRLGELMPNPLMNIFDQLQSI 648

Query: 438 I 440
           I
Sbjct: 649 I 649


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 146 INNRLFT-RFTQFLFHCIIQKCICLFF 69
           +N  L+     + LF CII++C+ +FF
Sbjct: 230 VNGELYNDESAKELFRCIIKECVDIFF 256


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 273 CDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPN 407
           C  I+       L+  D L   + +G++  KCL    E  EL+ N
Sbjct: 414 CQAILRMNSTKALACLDYLNENIFTGNQTMKCLEIHQELSELIRN 458


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 4   LCLLLTFYLKTSNFISNMNKE*KNKQIHFCIMQWKRNCVNRVKSRLL 144
           LCL +   L       ++N+  +NK IH  + +  RNC   + +R+L
Sbjct: 431 LCLYIQMALCEETLEKHINR--RNKHIHGVMSKGLRNCYILLFARIL 475


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,993,221
Number of Sequences: 5004
Number of extensions: 42663
Number of successful extensions: 139
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)