Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8g22
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    27   1.6  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   5.0  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   6.6  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   6.6  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    25   8.7  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    25   8.7  

>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -1

Query: 358 PRSLPNLGWNLNIALVVKCSRVSSRICTDYISSEIQNYYESNFLKKLT 215
           P SL  L W++  A V    RVS  I  + +SS++ + + +N LK L+
Sbjct: 752 PDSLSGLYWSVKSAGVRASRRVSRNIEGESVSSDLDDIF-ANVLKGLS 798


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 505 HGPVHPAIEDHAQSLLKL 452
           H P HP +ED AQ L KL
Sbjct: 122 HDPDHPTLEDVAQMLGKL 139


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +2

Query: 65   SDGISNRVIKLLPVQLIVMLASIFNAAMKNSAAYDLCRYLRCKF 196
            S G +NRV+K +   L   LA   NAA  +S++  +C  LR  F
Sbjct: 1035 SAGKNNRVLKFVYDNLASCLAHEINAA--DSSSEQICNALRRGF 1076


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 397 VRTCRQKQHSHSLPRSLPNLGWNLNIALVVK 305
           V  C++K H  +LP  L N  + L+  LV++
Sbjct: 548 VIVCKRKNHKENLPAQLANGIYRLDDTLVLE 578


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 340 SWEVNVAVSGYAASAYMFGLAQLS 411
           SW  N ++SG   SA  F  AQLS
Sbjct: 476 SWPQNPSISGSVHSATTFDKAQLS 499


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 134 FNAAMKNSAAYDLCRYLRCKFDEL 205
           F   MK   A +LC  L C  DEL
Sbjct: 367 FKGLMKKMKAEELCSTLNCTKDEL 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,152,555
Number of Sequences: 5004
Number of extensions: 44398
Number of successful extensions: 114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)