Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8g22
         (511 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659...    30   0.94 
11_04_0144 + 14044973-14044984,14045050-14045183,14045329-140458...    29   1.6  
04_03_0709 + 18902507-18902704,18902795-18905028,18905114-189053...    28   5.0  
03_05_1007 - 29637911-29638333,29640095-29640282,29640688-296407...    28   5.0  
09_06_0201 - 21545189-21545494,21545593-21545743,21545835-215460...    27   6.6  

>02_02_0078 +
           6587491-6588021,6588160-6589151,6592430-6592607,
           6592635-6592794,6592992-6593158,6593246-6593869
          Length = 883

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +2

Query: 2   PVTPMEVKDLIKDLRPRKAPGSDG--ISN--RVIKLLPVQLIVMLASIFNAAMKN 154
           P +  E+KD +  + P KAPG DG  + N   + K  P+ L  +L  I +  + N
Sbjct: 152 PYSDDEIKDALFQMGPTKAPGPDGRKVHNPEHLSKFRPISLCNVLYKIASKVLAN 206


>11_04_0144 +
           14044973-14044984,14045050-14045183,14045329-14045824,
           14046097-14046117,14047504-14047767,14048635-14048715
          Length = 335

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 17  EVKDLIKDLRPRKAPGSDGISNRVIK 94
           EV +LIK ++P KAP  DGI+   +K
Sbjct: 226 EVDNLIKVIQPDKAPSPDGINGYFLK 251


>04_03_0709 + 18902507-18902704,18902795-18905028,18905114-18905365,
            18905446-18905556,18905646-18905727,18906002-18906193
          Length = 1022

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 101  PVQLIVMLASIFNAAMKNSAAYDLCRYLRC 190
            P+  I  +A  FN     + A DLCR++RC
Sbjct: 959  PIPEIPYIAQRFNHTTILNVAADLCRFIRC 988


>03_05_1007 -
           29637911-29638333,29640095-29640282,29640688-29640773,
           29641108-29641173,29641289-29641331,29641398-29642328
          Length = 578

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -2

Query: 114 MSWTGRSLITRLDIP-SEPGA 55
           MSW  RSL T L+IP  +PGA
Sbjct: 1   MSWLARSLATSLNIPEDDPGA 21


>09_06_0201 -
           21545189-21545494,21545593-21545743,21545835-21546072,
           21546158-21546365,21546446-21546639,21546721-21546819,
           21546886-21546922,21548242-21548775
          Length = 588

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 254 NFTGNIVGAYSGTNS*AFYNQGNVKIPSQVGK*TWQ 361
           N TG   GA +G  +    N GN+ + S  G   WQ
Sbjct: 116 NVTGGAAGAGNGNTTAVLMNTGNLVVRSPNGTALWQ 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,013,497
Number of Sequences: 37544
Number of extensions: 293899
Number of successful extensions: 675
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)