Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8g22
         (511 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53338-4|AAA96192.3|  235|Caenorhabditis elegans Hypothetical pr...    31   0.37 
AF317421-1|AAK69599.1|  235|Caenorhabditis elegans lysosomal-ass...    31   0.37 
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical...    29   2.0  
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ...    29   2.0  
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z81481-6|CAB63435.1|  344|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>U53338-4|AAA96192.3|  235|Caenorhabditis elegans Hypothetical
           protein C05E11.3 protein.
          Length = 235

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 351 ERGSEWLC-CFCLHVRTGTIILGSWHLFLHLVAL 449
           E   E+ C C C HV+TG  I+G  H+ + L  L
Sbjct: 33  ESSDEYRCLCNCFHVKTGAFIIGCVHVLMILFFL 66


>AF317421-1|AAK69599.1|  235|Caenorhabditis elegans
           lysosomal-associated transmembraneprotein protein.
          Length = 235

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 351 ERGSEWLC-CFCLHVRTGTIILGSWHLFLHLVAL 449
           E   E+ C C C HV+TG  I+G  H+ + L  L
Sbjct: 33  ESSDEYRCLCNCFHVKTGAFIIGCVHVLMILFFL 66


>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
            protein Y18D10A.13 protein.
          Length = 2417

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = +2

Query: 56   APGSDGISNRVIKLLPVQLIV---MLASIF-NAAMKNSAAYDLCRYLRCKFDELKFYCQF 223
            AP SD   ++ I LL + + +    L S F N+ +      DL    +CK   L+F C+ 
Sbjct: 1281 APASDEEKHKHITLLELLITISLHFLRSYFLNSPISPVTEADLTSLWKCKISALEFLCEL 1340

Query: 224  F 226
            F
Sbjct: 1341 F 1341


>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
            protein protein.
          Length = 2417

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = +2

Query: 56   APGSDGISNRVIKLLPVQLIV---MLASIF-NAAMKNSAAYDLCRYLRCKFDELKFYCQF 223
            AP SD   ++ I LL + + +    L S F N+ +      DL    +CK   L+F C+ 
Sbjct: 1281 APASDEEKHKHITLLELLITISLHFLRSYFLNSPISPVTEADLTSLWKCKISALEFLCEL 1340

Query: 224  F 226
            F
Sbjct: 1341 F 1341


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +2

Query: 5   VTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMKNSAAYD 169
           +T +E+ ++   + P  A G DGI+   I+ LP+     LA ++N ++  +   D
Sbjct: 328 ITSIELHNMAIKMSPSAAIGPDGIAQIHIRKLPMCGYSFLAYLYNVSLSTNIIPD 382


>Z81481-6|CAB63435.1|  344|Caenorhabditis elegans Hypothetical
           protein C38D9.8 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 342 TWDGILTLPWL*NAQELVPEYAPTIFPVK 256
           +WD I+ L  L NAQE  PE+ P  F +K
Sbjct: 235 SWDPIVVLEGL-NAQEWSPEHRPQKFSLK 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,921,534
Number of Sequences: 27780
Number of extensions: 251072
Number of successful extensions: 510
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)