Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8g21
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    28   0.77 
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    26   3.1  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    26   3.1  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   4.1  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   4.1  
SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   5.4  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    25   5.4  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    25   9.5  

>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 216 YGVWYRLNTDRNFRLYMFKNHNWVLEAYYGL-GEKI 320
           YG W  + T  +F +Y      W++E  YG+ GE++
Sbjct: 280 YGGWDGVKTFSDFWIYNVDKDLWIMENEYGIPGERV 315


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = +3

Query: 15  SVINFCKKCNQGLVSLIRNFHKRS*HFLLCN---LSIMLKKEPKPI 143
           SV+  C +CN       R  H R    ++C    L I L + P+P+
Sbjct: 276 SVVQICPECNNSFTLTRRRRHCRLCGRVICRFCVLEISLPQHPQPL 321


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 175 FREVLIRFLNVIGFGSFFNIIDRLQSKK 92
           FRE    F+N     S  N IDR++ KK
Sbjct: 446 FREKNCAFVNFTSLASAINAIDRIKQKK 473


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 436 PESGSYSNTHLTSPINPGAYSLPSPSHTF 350
           P S S S+  +T P +P A S+    H+F
Sbjct: 581 PSSTSRSSVKITGPSSPNARSMAYEQHSF 609


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 270 KNHNWVLEAYYG 305
           K HNW+L  YYG
Sbjct: 144 KKHNWMLRLYYG 155


>SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 191

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +3

Query: 255 RLYMFKNHNWVLEA----YYGLGEKIADQKTRQLDL 350
           +L+++ +  W+L+     Y  L EK  D+K  QLDL
Sbjct: 106 KLWLWSSRFWLLDTLLTIYQLLREKTEDEKEHQLDL 141


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 261 YMFKNHNWVLEAYYGLGEKIADQKTRQLDLKVWDGE 368
           Y+ K H   + A   LGE I    +    +K+W+GE
Sbjct: 131 YVLKGHQSSVWAVLALGEDIFITGSADKLIKIWNGE 166


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -3

Query: 421 YSNTHLTSPINPGAYSLPSPS 359
           + +T LT P+NP  +++  P+
Sbjct: 342 FGHTSLTQPVNPNGFTVQPPA 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,166,683
Number of Sequences: 5004
Number of extensions: 42674
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)