Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8g21
         (540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0765 - 20421813-20423174,20423591-20423771,20423862-204241...    31   0.59 
01_06_0597 - 30505800-30506021,30506135-30506566,30506673-30506819     30   1.0  
03_06_0592 - 34941530-34941550,34942444-34942806,34942940-349429...    30   1.4  
11_05_0010 - 18356835-18357080,18357475-18357672,18357780-183580...    28   4.1  
01_06_0599 - 30513858-30514079,30514157-30514588,30514683-30514823     28   4.1  
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085...    27   7.2  
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089...    27   9.6  

>10_08_0765 -
           20421813-20423174,20423591-20423771,20423862-20424117,
           20424768-20425095,20425218-20426156,20427015-20427761,
           20428517-20428789
          Length = 1361

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 467 LFTLVKPDDELLKKFDEHSKNTDA 538
           LFT+ KP DE +  FD H +  DA
Sbjct: 514 LFTIFKPSDEPIDSFDSHDQTDDA 537


>01_06_0597 - 30505800-30506021,30506135-30506566,30506673-30506819
          Length = 266

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 18/36 (50%), Positives = 23/36 (63%)
 Frame = -3

Query: 427 GSYSNTHLTSPINPGAYSLPSPSHTFRSS*RVF*SA 320
           GSY N  LTSPI PGA +  + + TF SS  +F +A
Sbjct: 107 GSY-NALLTSPILPGAGAYDAAAETFESSHDLFRAA 141


>03_06_0592 -
           34941530-34941550,34942444-34942806,34942940-34942991,
           34943277-34943488
          Length = 215

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 118 IIDRLQSKKC*ERLWKFLIKETKPWLHFLQKL 23
           +I RLQ+K      W FL++ETK  + F+Q++
Sbjct: 151 VIARLQAKGEERSRWTFLLRETKAMMTFIQEV 182


>11_05_0010 -
           18356835-18357080,18357475-18357672,18357780-18358046,
           18358870-18359067,18359151-18359417,18359524-18359724,
           18359807-18361363,18361499-18361859,18362602-18363467
          Length = 1386

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 426 PLSGWSHLAPLVTLCSRWSNLMMNFSKSLMNIQRILMQ 539
           PLSGW+  +P  ++  RW N  +     L  I +IL Q
Sbjct: 731 PLSGWAEFSPF-SILPRWINSSLTNLSYLSIIVKILQQ 767


>01_06_0599 - 30513858-30514079,30514157-30514588,30514683-30514823
          Length = 264

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = -3

Query: 427 GSYSNTHLTSPINPGAYSLPSPSHTFRSS*RVF*SA 320
           GSY N  L SPI PGA +  + + TF SS  +F +A
Sbjct: 105 GSY-NALLASPILPGAGAYDAAAETFESSHDLFRAA 139


>01_05_0495 +
           22705697-22705765,22705903-22706025,22708429-22708586,
           22709162-22709206,22709367-22709445,22709522-22709595,
           22709703-22709809,22711116-22711301,22711882-22711920,
           22712020-22712086,22712207-22712281,22713113-22713347,
           22713425-22713755,22714530-22714710,22714810-22714950,
           22715041-22715302,22715503-22715892,22717179-22717735,
           22718421-22718557,22718672-22718853,22718959-22719339,
           22719420-22719545,22719635-22719700,22720056-22721839,
           22721914-22722193,22722386-22722616,22723067-22723588,
           22723683-22723815,22723937-22724193
          Length = 2405

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 172 REVLIRFLNVIGF-GSFFNIIDRLQSKKC*ERLWKFLIKETKPWLHFLQ 29
           R ++  FL  +G+  S    +D   S KC  + WK ++KE   WL+ L+
Sbjct: 571 RHLVPLFLTFMGYDNSNITSVDSYISNKCKGKQWKTILKE---WLNVLR 616


>12_02_0957 +
           24807261-24807311,24807436-24807773,24808727-24808927,
           24809024-24809069,24809284-24809600,24809949-24810072,
           24810465-24810537,24810968-24811173,24811384-24811651,
           24811780-24811877,24812116-24812379
          Length = 661

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 457 NGAKCDHPESGSYSNTHLTSPINPGA-YSLPSPSHT 353
           N   C H  S SY + HL SP    + +++  P H+
Sbjct: 107 NNTPCGHEGSMSYHDNHLQSPSESSSFFNISLPPHS 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,069,351
Number of Sequences: 37544
Number of extensions: 246588
Number of successful extensions: 513
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)