Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8g19
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    43   3e-05
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    28   0.73 
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    28   0.73 
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    27   2.2  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    26   3.0  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    25   5.2  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   9.0  
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    25   9.0  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 42.7 bits (96), Expect = 3e-05
 Identities = 21/78 (26%), Positives = 43/78 (55%)
 Frame = +3

Query: 288 QYPSYAEVMNEVERLKAGALRLLTREQVIYMLNKWVLEPDIKHELCLAFKVFDTEKRGFL 467
           Q P+ AE+ + +  + A     +   + + M+ + + + D + E+  AFKVFD +  G++
Sbjct: 43  QSPTAAELQDMINEVDADGNGTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYI 102

Query: 468 EIDELKTIVTSYAEPFSE 521
            ++EL  ++TS  E  S+
Sbjct: 103 TVEELTHVLTSLGERLSQ 120


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
 Frame = +3

Query: 60  INSNYFFDTMAVLDAYNPLQNVSLRFNEDQLKEIGEWFENNAKPQLT---STDGDPIRAI 230
           I +NY F     L     L+     F +   ++ GE+F+N  K +LT    +D + +R +
Sbjct: 461 ILNNYIFSCPLFLVTPEELEEQYTDFFKKLKEKYGEFFQNLLKKELTGKPESDLEGLRLV 520

Query: 231 TVDKFVSFLNLK-KFHRRNF 287
            V    ++ NLK  F  R F
Sbjct: 521 GVQLQATYENLKSNFSARIF 540


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = +3

Query: 255 LNLKKFHRRNFQYPSYAEVMNEVERLKAGALRLLTREQVIYMLNKWVLEPDIKHELCLAF 434
           + L  FHRR         +  ++ R K     + + +   Y   KWVLE DI   L L F
Sbjct: 529 IGLAIFHRRFLDAFFVVSLYKKLLRKKVSLADMESIDAEFYRSLKWVLENDITGILDLTF 588

Query: 435 KV 440
            V
Sbjct: 589 SV 590


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +3

Query: 375 YMLNKWVLEPDIKHELCLAFKVFDTEKRGFLEIDELKTIVTSYAEPFSE 521
           ++ NK + E + + E   AF+VFD +  G++E  +    + +  E  S+
Sbjct: 66  FVSNK-LRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSD 113


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 363 EQVIYMLNKWVLEPDIKHELCLAFKV 440
           ++V Y   KW+   D+   LCL F V
Sbjct: 450 DEVYYESLKWIKNNDVDESLCLNFSV 475


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/44 (20%), Positives = 22/44 (50%)
 Frame = +3

Query: 108 NPLQNVSLRFNEDQLKEIGEWFENNAKPQLTSTDGDPIRAITVD 239
           N  +N+S+   +D+++E+G+         +  +   P+   T+D
Sbjct: 147 NVSENISVNTEDDKVEEVGQKLNYTKITSIDQSQETPVHLSTID 190


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 93  VLDAYNPLQNVSLRFNEDQLKEIGEWFENNAKPQLTSTDGDPIRAITVD 239
           VL + NP QN+   +N++ +K   +  E    P L S       A+T D
Sbjct: 101 VLVSINPYQNLPEFYNDNLIKHFHKDPEAAKVPHLYSIASSCYHALTTD 149


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/44 (22%), Positives = 26/44 (59%)
 Frame = +3

Query: 363 EQVIYMLNKWVLEPDIKHELCLAFKVFDTEKRGFLEIDELKTIV 494
           ++ I  L+ + +  + + +L  AFK++D ++ G++   EL  ++
Sbjct: 76  QEFINSLSVFSVHGNKEEKLKFAFKIYDIDRDGYISNGELYLVL 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,896,258
Number of Sequences: 5004
Number of extensions: 35579
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)