Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8g17
         (603 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    24   0.86 
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   2.6  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   4.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.6  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 334 VGAGVKRVSDTRRSAQSVLPK 396
           + A  KRVSD RRS + ++ K
Sbjct: 24  MAAATKRVSDNRRSNKPIMEK 44


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -2

Query: 296 GSKIMTESLFSLRANLAATVQPPDPPPTTSSLHE 195
           GS  M + +   R  L  T  PP      SS+H+
Sbjct: 111 GSHWMNQDISFSRVKLTNTCSPPQGQLVLSSMHK 144


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = +1

Query: 286 ILEPSNDHYYQPLFTLVGAGVKRVSDTRRSAQSVLPKAAKWLRD 417
           IL+P     + P+  ++ + V         +  V P  A+W++D
Sbjct: 147 ILQPGVKGLHGPITRVIDSKVVDSRKNTTVSIDVFPAVARWMQD 190


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 176  EELEKFLHTLDDDTK 132
            E +E++LH ++DD K
Sbjct: 1198 ELIEQYLHPIEDDKK 1212


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 176  EELEKFLHTLDDDTK 132
            E +E++LH ++DD K
Sbjct: 1198 ELIEQYLHPIEDDKK 1212


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,078
Number of Sequences: 336
Number of extensions: 3026
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)