Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8g17
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    98   1e-21
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    29   0.69 
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    29   0.69 
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    28   1.2  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    27   2.1  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   2.1  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    26   4.9  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    25   6.4  
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    25   6.4  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   8.5  

>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 97.9 bits (233), Expect = 1e-21
 Identities = 56/150 (37%), Positives = 91/150 (60%), Gaps = 16/150 (10%)
 Frame = +1

Query: 202 KLLVVGGGSGGCTVAA---------KFARRLNKDSVI------ILEPSNDHYYQPLFTLV 336
           K+LVVGGGS G +VA          +FA    KD+ +      I++ +  HYYQP +TL 
Sbjct: 30  KVLVVGGGSAGISVAHQIYNKFSKYRFANDQGKDTSLKPGEIGIVDGAKYHYYQPGWTLT 89

Query: 337 GAGVKRVSDTRRSAQSVLPKAAKWLR-DSAETINAKANVVTTKDGHVINYEYIVIAVGLK 513
           GAG+  V+ TRR   S++P     L  +  ++++ + N + T+ G  I+Y+Y+V+A G+ 
Sbjct: 90  GAGLSSVAKTRRELASLVPADKFKLHPEFVKSLHPRENKIVTQSGQEISYDYLVMAAGIY 149

Query: 514 SDYNKIPGLTEALNDTSSGVSTIYAPEYCE 603
           +D+ +I GLTEAL+D ++ V TIY+ +Y +
Sbjct: 150 TDFGRIKGLTEALDDPNTPVVTIYSEKYAD 179


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 11/125 (8%)
 Frame = +1

Query: 205 LLVVGGGSGGCTVAAKFARRLNKDSVIILEPSNDHYYQPLFTLVGAGVKRVSDTRRSAQS 384
           L+V+G G G  ++       L   +VI++ P N   +  L      G        +  + 
Sbjct: 94  LVVLGAGWGATSILRTIDTSLF--NVIVVSPRNYFLFTSLLPSTATGSVHTRSIVQPIRY 151

Query: 385 VLPKAA---KWLRDSAETINAKANVV----TTKDG----HVINYEYIVIAVGLKSDYNKI 531
           +L   +   K+       ++A   V+    TT DG      I Y+Y+V + G ++    I
Sbjct: 152 MLRHKSCYVKFYEAECTDVDADKKVIHIKKTTTDGVDLEQEIKYDYLVCSHGAETQTFNI 211

Query: 532 PGLTE 546
           PG+ E
Sbjct: 212 PGIAE 216


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
 Frame = -3

Query: 232 HPILHQQLAAYMNNLHYILKNLRSFYIRWTM-----IQNSTIVLYSCFF-----IIILEK 83
           H +L Q+   +  +   +  + R   IRW       +Q S I+LYSCF      ++I   
Sbjct: 64  HQVLPQERGVFSLSSKSLRLSNRKGTIRWRYHSVPCVQRSMIILYSCFLCSKHAVLISRD 123

Query: 82  GACVRFRENF 53
             C+ +R  F
Sbjct: 124 SDCIDYRAMF 133


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +1

Query: 298 SNDHYYQPLFTLVG-AGVKRVSDTRRSAQSVLPKA-AKWLRDSAETINAKANVVT 456
           +N  Y+  +FTL+   G+   S      QS+  ++ A+W    AE+INA+ANV+T
Sbjct: 33  NNPWYFILVFTLLSITGI--YSSLVAYQQSLYDQSLARWSAWYAESINAEANVIT 85


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -3

Query: 235 NHPILHQQLAAYMNNLHYILKNLRSFYIRWTMIQNSTIVLYSCFFI 98
           N  +LHQ +    N  +Y  KNL+ F +    + N    ++  F +
Sbjct: 416 NPDMLHQTILPNANRWYYFFKNLKLFVLDEAHVYNGIFGVHVAFVL 461


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 475 INYEYIVIAVGLKSDYNKIPGLTEALNDTSSGVST 579
           ++ E+  I V    DY K+  + EAL D +S VS+
Sbjct: 356 VSREFYTILVNTLHDYIKVISIDEALLDITSSVSS 390


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 232 HPILHQQLAAYMNNLHYILKN 170
           HPIL+Q  A Y+ N++  L+N
Sbjct: 597 HPILNQATAEYITNIYCGLRN 617


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 208 LVVGGGSGGCTVAAKFARRLNKDSVI 285
           LV+GGGSGG   A + A+   K ++I
Sbjct: 11  LVIGGGSGGLASARRAAKHGAKVALI 36


>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 20/95 (21%), Positives = 44/95 (46%)
 Frame = +1

Query: 229 GGCTVAAKFARRLNKDSVIILEPSNDHYYQPLFTLVGAGVKRVSDTRRSAQSVLPKAAKW 408
           G   +  + A  L   +V ++   +  + + +   VG  +K + +    A   L  + K 
Sbjct: 308 GSSFIGLELAVVLKDHNVSVIGMESIPFEKVMGKEVGTALKALHEQNGIA-FYLENSIKE 366

Query: 409 LRDSAETINAKANVVTTKDGHVINYEYIVIAVGLK 513
           ++ S+   ++KA  +  KDG  I  + +++A G+K
Sbjct: 367 VKTSSND-SSKAEHIVLKDGQSIPADVVILAAGVK 400


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 505 GLKSDYNKIPGLTEALNDTSSGVSTIYAP 591
           G++S       L  AL+++SS  STIY P
Sbjct: 15  GMQSMSGSFSSLQIALDESSSNFSTIYEP 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,459,367
Number of Sequences: 5004
Number of extensions: 50421
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)