Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8g17
(603 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024882-18|AAF60938.1| 392|Caenorhabditis elegans Hypothetical... 126 9e-30
Z82265-3|CAB05173.1| 471|Caenorhabditis elegans Hypothetical pr... 122 1e-28
U61947-1|AAB03136.3| 667|Caenorhabditis elegans Thioredoxin red... 29 1.9
AF162693-1|AAD46625.1| 525|Caenorhabditis elegans thioredoxin r... 29 1.9
AF148217-1|AAD41826.1| 667|Caenorhabditis elegans thioredoxin r... 29 1.9
U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z77131-3|CAB00855.1| 156|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z66512-1|CAA91322.1| 638|Caenorhabditis elegans Hypothetical pr... 27 7.8
U61944-3|AAB03119.1| 818|Caenorhabditis elegans Hypothetical pr... 27 7.8
>AC024882-18|AAF60938.1| 392|Caenorhabditis elegans Hypothetical
protein Y9C9A.16 protein.
Length = 392
Score = 126 bits (305), Expect = 9e-30
Identities = 60/130 (46%), Positives = 84/130 (64%)
Frame = +1
Query: 202 KLLVVGGGSGGCTVAAKFARRLNKDSVIILEPSNDHYYQPLFTLVGAGVKRVSDTRRSAQ 381
KLLVVGGG+GG +A+KF R+L S+ I+EP DHYYQP FTLVG G+ + R+
Sbjct: 41 KLLVVGGGAGGLGIASKFTRKLPSGSLGIIEPLEDHYYQPGFTLVGGGLMTLDSNRKKQV 100
Query: 382 SVLPKAAKWLRDSAETINAKANVVTTKDGHVINYEYIVIAVGLKSDYNKIPGLTEALNDT 561
+++PK A W++D ET N N V + G I+YEY+VIA+G+ ++ I G EAL
Sbjct: 101 NLIPKGATWIQDKVETFNPSQNTVVLRGGEEISYEYMVIAMGIHLRFDMIKGAVEALE-- 158
Query: 562 SSGVSTIYAP 591
+ GV + Y+P
Sbjct: 159 TPGVCSNYSP 168
>Z82265-3|CAB05173.1| 471|Caenorhabditis elegans Hypothetical
protein F02H6.5 protein.
Length = 471
Score = 122 bits (295), Expect = 1e-28
Identities = 61/134 (45%), Positives = 85/134 (63%)
Frame = +1
Query: 202 KLLVVGGGSGGCTVAAKFARRLNKDSVIILEPSNDHYYQPLFTLVGAGVKRVSDTRRSAQ 381
KLLVVGGG+GG A+KFAR+L + SV I+EP DHYYQP FTLVG G+ + R +
Sbjct: 13 KLLVVGGGAGGLGAASKFARKLPRGSVGIIEPREDHYYQPGFTLVGGGLMSLEANRGKQK 72
Query: 382 SVLPKAAKWLRDSAETINAKANVVTTKDGHVINYEYIVIAVGLKSDYNKIPGLTEALNDT 561
++PK A W++D + N V + G I Y+Y+VIA+G++ Y+ I G EAL+
Sbjct: 73 DLIPKNATWIQDKVQKFEPAKNSVKLRGGDEITYDYMVIAMGVQLRYDMIKGAKEALD-- 130
Query: 562 SSGVSTIYAPEYCE 603
+ GV + Y+P Y E
Sbjct: 131 TPGVCSNYSPFYVE 144
>U61947-1|AAB03136.3| 667|Caenorhabditis elegans Thioredoxin
reductase protein 1 protein.
Length = 667
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +1
Query: 190 NYSCKLLVVGGGSGGCTVAAKFARRLNK 273
+++ L+V+GGGSGG AAK A RL K
Sbjct: 170 DHTYDLIVIGGGSGG-LAAAKEASRLGK 196
>AF162693-1|AAD46625.1| 525|Caenorhabditis elegans thioredoxin
reductase homolog protein.
Length = 525
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +1
Query: 190 NYSCKLLVVGGGSGGCTVAAKFARRLNK 273
+++ L+V+GGGSGG AAK A RL K
Sbjct: 28 DHTYDLIVIGGGSGG-LAAAKEASRLGK 54
>AF148217-1|AAD41826.1| 667|Caenorhabditis elegans thioredoxin
reductase protein.
Length = 667
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +1
Query: 190 NYSCKLLVVGGGSGGCTVAAKFARRLNK 273
+++ L+V+GGGSGG AAK A RL K
Sbjct: 170 DHTYDLIVIGGGSGG-LAAAKEASRLGK 196
>U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical
protein F09F9.4 protein.
Length = 654
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = -1
Query: 504 NSDNDVLVIDDVSIFR-RHNIRFGVNRFGGISQPFRCFR*HALCGSPSVAHTFHSGSYQS 328
N D+ + I+++ I H+++ ++F I + + CF ++ + SV+HT+HS +
Sbjct: 251 NHDDGAVYIEEIGIAPDMHHLKISCSQFDIIHEKY-CFELVSVNRNSSVSHTWHSVCVST 309
Query: 327 E 325
E
Sbjct: 310 E 310
>Z77131-3|CAB00855.1| 156|Caenorhabditis elegans Hypothetical
protein C54C6.4 protein.
Length = 156
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = -3
Query: 244 QLCNHPILHQQLAAYMNNLHYILKNLRSFYIRWTMIQNSTIVLYSCFFIIILEKG 80
QLC++ LH M+N+ + + + ++Q ST +L S +FIII+++G
Sbjct: 96 QLCSNLSLHYFC---MSNIRMTFSFVYFCFFCFRLLQLSTWLLLSTYFIIIVKRG 147
>Z66512-1|CAA91322.1| 638|Caenorhabditis elegans Hypothetical
protein F52H3.2 protein.
Length = 638
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 205 LLVVGGGSGGCTVAAKFARRLNKDSVIILEPSN 303
++V+GGG GC AA A R ++V++ + N
Sbjct: 19 VIVIGGGHAGCESAAA-AARCGSNTVLVTQNKN 50
>U61944-3|AAB03119.1| 818|Caenorhabditis elegans Hypothetical
protein T12E12.3 protein.
Length = 818
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = -2
Query: 302 LLGSKIMTESLFSLRANLAATVQPPDPPPTTSSLHE*FALHIEELEKFLHTLDD-DTKLN 126
LL S+++++ +F +++ P+P +SSL + L+ + ++ L DD D L
Sbjct: 560 LLPSEVVSQDVFGSQSDSTVPESAPEPAEISSSLVDSDDLNSKSAQQVLDDADDEDMDLM 619
Query: 125 NRAVFM 108
N V +
Sbjct: 620 NADVIL 625
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,618,653
Number of Sequences: 27780
Number of extensions: 287933
Number of successful extensions: 987
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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