Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8g12
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    31   0.14 
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    29   0.56 
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    26   5.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   6.9  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    25   6.9  
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    25   9.1  

>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 17/43 (39%), Positives = 28/43 (65%)
 Frame = +1

Query: 376 YFKSSTQVVANSLKPLVVVPTPSEKTVVLPLPKTSTVETLHGS 504
           YF+S+T   A S +   ++PT +EK++ LPL   ST++T+  S
Sbjct: 699 YFRSNTSGSAKS-EGYYIIPT-TEKSLYLPLRNRSTIDTISHS 739


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +1

Query: 328 YRNKMNSVVRAGHLAPYFKSSTQVVANSLKPLVVVPTPSEKTVVLPLPKTSTV 486
           +R   +S +  G +AP     ++ +++   PL     PS   ++LP  ++ST+
Sbjct: 399 HRILSSSTINDGEVAPPLPQRSRTISSPNSPLSATVLPSSTPILLPRGRSSTL 451


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 148 NKWNTSNANFH*IINLVNFLDILHQNIKYR 59
           NK+N +N N + ++N     DI+    KY+
Sbjct: 71  NKFNDNNENIYQLLNSTRLRDIIEGTEKYK 100


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
 Frame = +1

Query: 310 NYLPIIYRNK-MNSVVRAGHLAPYFKSSTQVVANSLKPLVVVPTPSEKTVVL------PL 468
           NY  ++ RN+ +N+ +  G       +S     ++  P++   T S  +         PL
Sbjct: 49  NYADLLKRNEDLNASLSTGSPVEITSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPL 108

Query: 469 PKTSTVETLHGSLPIQG 519
           P TST  T   S+P  G
Sbjct: 109 PSTSTSCTTSTSIPPTG 125


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = +1

Query: 334 NKMNSVVRAGHLAPYFKSSTQVV-ANSLKPLVVVPTPS--EKTVVLPLPKTSTVETLHGS 504
           NK N+++  G  AP       V+  N+L   +   +    EK      P +ST+ T H S
Sbjct: 487 NKENTMLNDGSTAPAKNDIRNVINTNNLDAKLSDESELMIEKNKSYSTPASSTIPTFHTS 546

Query: 505 LPIQGLKV 528
            P+  L +
Sbjct: 547 QPLTSLNM 554


>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 458 TTVFSEGVGTTTRGFRLLATTW 393
           T +F  G+G + +G+  +A TW
Sbjct: 19  TVIFLHGLGDSGQGWSFMANTW 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,545,357
Number of Sequences: 5004
Number of extensions: 52172
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)