Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8g11
         (377 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    29   0.18 
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    28   0.42 
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    25   5.2  
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    25   5.2  
SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz...    24   6.9  
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo...    24   6.9  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    24   6.9  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    24   9.1  

>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 29.5 bits (63), Expect = 0.18
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 177 DVDTIGIYVGG-RNADGERHGEGWAVLPNGDFYTGCYCRGMRNGKGLYVFKNGA 335
           D D +  Y+ G +N DG   G+ W  +     Y+G  C  +  GK  Y+ KN A
Sbjct: 101 DKDKVASYIIGLQNEDGSMKGDRWGEIDARFLYSGINCLAIL-GKLDYLNKNTA 153


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 28.3 bits (60), Expect = 0.42
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 377 FFFYIISLIFNFVSSSVFKYIQSLS 303
           F FY+ +++  F  S+VF++I  LS
Sbjct: 543 FIFYLFTIVITFCMSAVFRFIALLS 567


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -3

Query: 288 YSNSLYRNRHSVEQPSLLRGVRHQHCDRLRKSQWYQHLQ 172
           Y N  Y N   VE  S L  +   HC  L +S  Y HL+
Sbjct: 379 YLNGPYDN---VEAKSALMNIYSSHCITLIESVRYMHLK 414


>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +1

Query: 76  IHLHIPNKLLGVFCNYLIVLTKKEWSKKRERGL 174
           +H  +P K LG+ C +   L    + K R   L
Sbjct: 55  LHEQVPTKYLGIICVFFPALVLYGFGKLRNNSL 87


>SPBC342.04 |||adhesion regulating molecule protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 291

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 251 NSPAFSVAFAISIATAYVNPNGINIFRPLSLFFDHS 144
           +SP ++ A   S + A  +P G+NI   L L  D S
Sbjct: 231 SSPQYAQALR-SFSQALNSPGGVNIISALGLSLDES 265


>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 294 MRNGKGLYVFKNGARYE 344
           ++NG  +YV +NG  YE
Sbjct: 289 LKNGWSIYVVRNGENYE 305


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -1

Query: 239 FSVAFAISIATAYVNPNGINIFRPLSLFFDHSF 141
           FS++  +    A  NP G+ +F  L   F   F
Sbjct: 476 FSISMLVEGYPAVANPEGVEVFEILDEMFFQQF 508


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 206 AYVNPNGINIFRPLSLFFDHS 144
           AY +P GIN  R + LF+  +
Sbjct: 274 AYQSPTGINTLRRILLFYSET 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,458,991
Number of Sequences: 5004
Number of extensions: 28542
Number of successful extensions: 77
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)