Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8g11
(377 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125954-3|AAD14706.3| 323|Caenorhabditis elegans Serpentine re... 29 1.1
AC006769-4|AAF60584.1| 323|Caenorhabditis elegans Hypothetical ... 29 1.1
Z72512-2|CAA96664.1| 322|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical pr... 28 1.9
Z81530-6|CAB04310.1| 329|Caenorhabditis elegans Hypothetical pr... 27 4.5
U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical pr... 27 4.5
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr... 27 4.5
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 26 7.8
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 26 7.8
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 26 7.8
>AF125954-3|AAD14706.3| 323|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 71 protein.
Length = 323
Score = 29.1 bits (62), Expect = 1.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 377 FFFYIISLIFNFVSSSVFKYIQSLSVPHAPTV 282
+FF + LIF+F+ + F YI++L PT+
Sbjct: 136 YFFSAVVLIFSFLGPTNFGYIKALVTTFYPTI 167
>AC006769-4|AAF60584.1| 323|Caenorhabditis elegans Hypothetical
protein Y45G12C.9 protein.
Length = 323
Score = 29.1 bits (62), Expect = 1.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 377 FFFYIISLIFNFVSSSVFKYIQSLSVPHAPTV 282
+FF + LIF+F+ + F YI++L PT+
Sbjct: 136 YFFSAVVLIFSFLGPTNFGYIKALVTTFYPTI 167
>Z72512-2|CAA96664.1| 322|Caenorhabditis elegans Hypothetical
protein R07B5.4 protein.
Length = 322
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 365 IISLIFNFVSSSVFKYIQSLSVPHAPTVTACIEIAI 258
IIS +F+ V + + SL +PH T+C ++ I
Sbjct: 148 IISKVFDIVCPILIVFGHSLGIPHLLLTTSCFQMGI 183
>Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical protein
F21G4.6 protein.
Length = 1885
Score = 28.3 bits (60), Expect = 1.9
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -1
Query: 245 PAFSVAFAISIATAYVNPNGINIFRPLSLFFDHSFFVNTIK 123
P ++A +S+ T Y+ + +NIF ++ + D NT+K
Sbjct: 967 PFSAIALPVSLITNYLTSDKVNIFEIINQWLDDPVPENTLK 1007
>Z81530-6|CAB04310.1| 329|Caenorhabditis elegans Hypothetical
protein F36D1.8 protein.
Length = 329
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 233 VAFAISIATAYVNPNGINIFRPLSLFFDHSFFV 135
+ ++I + VN G+ F P + FDH FFV
Sbjct: 44 IKYSIVVDEKIVNFTGVEDFIPPFVDFDHGFFV 76
>U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical protein
T13H2.5b protein.
Length = 1092
Score = 27.1 bits (57), Expect = 4.5
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -1
Query: 341 VSSSVFKYIQSLSVPHAPTVTACIEIAIR*NSPAFSVAFAISIATAYV-NPNGINIFRPL 165
V ++ + S P AP ++ +PA + AIS+AT V P + FR +
Sbjct: 899 VQQNLLMRVPSAQTPVAPRAPTVAPQSVVQQAPAPATPIAISVATTQVTRPETVEPFRSI 958
Query: 164 S 162
S
Sbjct: 959 S 959
>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
T13H2.5a protein.
Length = 2471
Score = 27.1 bits (57), Expect = 4.5
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -1
Query: 341 VSSSVFKYIQSLSVPHAPTVTACIEIAIR*NSPAFSVAFAISIATAYV-NPNGINIFRPL 165
V ++ + S P AP ++ +PA + AIS+AT V P + FR +
Sbjct: 2278 VQQNLLMRVPSAQTPVAPRAPTVAPQSVVQQAPAPATPIAISVATTQVTRPETVEPFRSI 2337
Query: 164 S 162
S
Sbjct: 2338 S 2338
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 26.2 bits (55), Expect = 7.8
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 150 VEEKGEGPEDVDTI-GIYVGGRNADGERHGEGWAVLPN 260
+E KGE ED DTI G+ V GRN R + ++ N
Sbjct: 602 IELKGEA-EDYDTIPGMRVNGRNLTNLRFADDIVLIAN 638
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 26.2 bits (55), Expect = 7.8
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 150 VEEKGEGPEDVDTI-GIYVGGRNADGERHGEGWAVLPN 260
+E KGE ED DTI G+ V GRN R + ++ N
Sbjct: 773 IELKGEA-EDYDTIPGMRVNGRNLTNLRFADDIVLIAN 809
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 26.2 bits (55), Expect = 7.8
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 150 VEEKGEGPEDVDTI-GIYVGGRNADGERHGEGWAVLPN 260
+E KGE ED DTI G+ V GRN R + ++ N
Sbjct: 512 IELKGEA-EDYDTIPGMRVNGRNLTNLRFADDIVLIAN 548
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,093,070
Number of Sequences: 27780
Number of extensions: 159911
Number of successful extensions: 517
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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