Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8g11
         (377 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   0.68 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   2.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   3.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   3.6  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   3.6  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   6.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   8.4  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 0.68
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 300 SSCPYSNSLYRNRHSVEQPSLLRGVR 223
           S CP + SL  + HS    SL+ G R
Sbjct: 690 SQCPQTASLLSSTHSTLARSLMEGPR 715


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 338 SSSVFKYIQSLSVPHAPTVTACIEI 264
           S +V+K +      HAP  T  ++I
Sbjct: 46  SGAVYKVVDQTGPTHAPIFTIAVQI 70


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 26 FIVIHFLRTGFD*VPSVFIYTYRI 97
          F++  FLRT     P+ F +TY I
Sbjct: 23 FVLFSFLRTRTKLQPTYFHHTYII 46


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 26 FIVIHFLRTGFD*VPSVFIYTYRI 97
          F++  FLRT     P+ F +TY I
Sbjct: 23 FVLFSFLRTRTKLQPTYFHHTYII 46


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 300 SSCPYSNSLYRNRH 259
           +SC YSN+ Y N +
Sbjct: 309 NSCNYSNNYYNNNN 322


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 123 IITKDTKKFIRY 88
           I+ K TKKFIR+
Sbjct: 11  IVKKRTKKFIRH 22


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 218 SIATAYVNPNGINIFRP 168
           S+   ++N N IN+ RP
Sbjct: 618 SVELLFINNNYINLVRP 634


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,213
Number of Sequences: 438
Number of extensions: 2469
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)