Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8g10
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    31   0.11 
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    29   0.78 
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    28   1.0  
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    27   1.8  
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    27   3.2  
SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces pom...    25   7.3  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    25   9.7  

>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
 Frame = +3

Query: 426 RKGSGPKSETSEERAA--RLAKMSAYAAQRLANESPEQRATRLKRMSEYA----AKRLSS 587
           R+   P      ERAA  R  K  A  A+RL   + E++  RLK+  E A     KRL  
Sbjct: 695 RRNVDPMVSELSERAAQERERKEQAKEAKRLKKLAKEEK--RLKKKEEKARKAEEKRLQK 752

Query: 588 ETREQRAIRLARMSAYAARRLAN 656
           E R + A +++R SA+A + +AN
Sbjct: 753 E-RAKYAKQMSRESAHADQAIAN 774


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
 Frame = +3

Query: 336 EQETLNTVEPVDMIQEMDPLSLLEPKARRRRKGSGPKSETSEERAARLAKMSAYAAQRLA 515
           + + L  +E  +  ++   L  +  K ++R K    K    EER  R A+  A  A + A
Sbjct: 569 QAKLLEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKA 628

Query: 516 NESPEQRATR-------LKRMSEYAAKRLSSETREQR 605
            E+  Q   R       LKR  E   + L  + RE++
Sbjct: 629 LEAKRQEEARKKREEQRLKREQEKKQQELERQKREEK 665


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = -2

Query: 628 DILANLIALCSLVSD-ESLLAAYSDIRFSLVARCSGDSFASLCAAYAD--ILASRAALSS 458
           D+L  LI+LC  +SD  S+L   S    + V   S     S+  A+    + AS A +  
Sbjct: 541 DVLNELISLCDSLSDYRSILLLISLFFLTSVQTASSSQQISMFKAFRKTYLFASNAGIHI 600

Query: 457 DVSLFGPEPFLRLRALGSNND 395
           +   + P     L+ +GS+ +
Sbjct: 601 NAPYWDPFMITDLKFIGSSEN 621


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 420 RRRKGSGPKSETSEERAARLAKMSAYAAQRLANESPEQRATRLKRMS 560
           ++ KG+G   ET EE+ AR  K     A++  ++ P+    R  + S
Sbjct: 471 KQGKGNGRAKETPEEKRARKKKTKEDKAEKRKSKIPKYEKKRKLKQS 517


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 22/68 (32%), Positives = 30/68 (44%)
 Frame = -2

Query: 622 LANLIALCSLVSDESLLAAYSDIRFSLVARCSGDSFASLCAAYADILASRAALSSDVSLF 443
           +A  + L +L    +LL +YS    SL   C+GDS A L     D       LS D +  
Sbjct: 195 VAASLLLPALSGSCALLTSYSAKSKSLQVACTGDSRAVLGECTPDGSWEAIPLSRDQTGM 254

Query: 442 GPEPFLRL 419
            P+   RL
Sbjct: 255 NPDEASRL 262


>SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 351 NTVEPVDMIQEMDPLSLLEPKARRRRKGSGPKSETSE--ERAARLAKMS 491
           N  EP+D+    D  +L +   RR+ + S P S +++   R   L K S
Sbjct: 40  NDPEPMDISMSPDEKNLKKSTVRRKLRKSKPNSSSNQVSSRTRALTKRS 88


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 390 PLSLLEPKARRRRKGSGPKSE 452
           P+ L + K  RRR+G GP  E
Sbjct: 455 PIGLKKNKITRRRRGKGPGGE 475


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,539,115
Number of Sequences: 5004
Number of extensions: 48825
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)