Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8g08
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    27   2.4  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    27   3.1  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    26   4.1  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    25   7.2  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   7.2  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   9.5  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   9.5  

>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 955

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
 Frame = +2

Query: 110  FICNNNPRYLEQLYDNIYYHLLFNGTLIIQLFIIISGFLLSY------NLQIYEESHEIN 271
            ++ N NP+ +  + D+ ++ L+ +  L     ++ S  L S       +LQ+ E+   + 
Sbjct: 749  YMSNKNPKEIPDVIDD-FFRLMMDALLANPQMVLESQMLESLIQAAMMSLQL-EQQEPLQ 806

Query: 272  WKILPKQTLLRWLRLTPPYALILALTSTWMRHI 370
              +   Q LL +   TPPY+LI  L  + ++ +
Sbjct: 807  TVLNFLQDLLAFALHTPPYSLIEPLPDSLLKSL 839


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/77 (24%), Positives = 31/77 (40%)
 Frame = +2

Query: 152 DNIYYHLLFNGTLIIQLFIIISGFLLSYNLQIYEESHEINWKILPKQTLLRWLRLTPPYA 331
           D  + HL F+G L I  F+ + G  +       +  HE  W+    +     L ++  Y 
Sbjct: 287 DPHFLHLSFSGVLFI--FLFVEGIRILRLKPFGKMIHEFLWEYTDNRDHKGPLIISHIYL 344

Query: 332 LILALTSTWMRHINTGP 382
           LI      W+ +   GP
Sbjct: 345 LIGCAIPIWLSNALKGP 361


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +2

Query: 437 QHLLY-IHNYIDNTDCLVHS 493
           Q+LL  + NY+D +DCL HS
Sbjct: 58  QNLLNELDNYVDRSDCLFHS 77


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 75  HINTLHYFYIFLYFNIAKMLF 13
           H N   +F+IFLY +I + L+
Sbjct: 82  HANGASFFFIFLYLHIGRGLY 102


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 237 LYESRNPDIIMKSCIIN 187
           LY   N  +I+KSCIIN
Sbjct: 533 LYRDSNLQVIIKSCIIN 549


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +1

Query: 304 MVAAYSTICLNISTNIDLDETYQY 375
           +++A S++  ++ TN+ LD+ Y Y
Sbjct: 186 LLSAVSSVTESVETNLHLDQNYPY 209


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 568 TIFLDFEVRHTRYINNPKMNNCISTAMYQAVCIV 467
           T+  D  ++   Y  + K  NCI +  Y+ VC+V
Sbjct: 777 TVQSDSTIKAFTYNVDTKQLNCIKSWKYKTVCLV 810


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,642
Number of Sequences: 5004
Number of extensions: 67466
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)