Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8g05
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like |Schiz...    27   1.7  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    27   1.7  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    26   5.3  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    25   7.0  
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p...    25   7.0  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    25   9.3  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.3  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    25   9.3  
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.3  

>SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = +1

Query: 373 KLLQNDYDGMILTSPRAVEAVSKCWDPTKFVIWNSKDVYTVGEMSSQ 513
           KLL N  D + +  PR        WDPT F     K+VY      SQ
Sbjct: 77  KLLDNLQDFLDIKEPRGTMISKDMWDPTDF----HKNVYASALSKSQ 119


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 471 ELERCVHSWRDELSKNKIVTRFGRARGYS 557
           ++ R V+ W+ E+ +NK + R GR+R +S
Sbjct: 133 DMHRQVYRWQQEVDQNKQIRR-GRSRSFS 160


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = -1

Query: 572 FSALPAVAPSASKPSNNFIF*ELISPTVYTSFEFQMTNFVGSQH 441
           FS  P+++PS+++  N  +  E ++  +  + ++   +F  SQH
Sbjct: 74  FSLAPSLSPSSAQSHNTALITEPLTSFIGGTSQYPSASFSTSQH 117


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 352 NIEELSQKLLQNDYDGMILTSPRAVEAVSKCWDPTKFVIWNSKDVY 489
           NI    +K+LQN Y+   + S   V+ VSK     + +   S D +
Sbjct: 64  NIRNNLEKVLQNSYEFQSMVSLPKVDRVSKFLSDNESISQTSGDYF 109


>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 280 DYQRIFRENNFETIFVEPLQFIYINIEELSQKLLQNDYDGMIL 408
           DY    RE NF    +EP+Q  Y +  E+ +KL     +G+I+
Sbjct: 270 DYSLFNREFNFFGNKIEPIQASYDHAVEVYKKLTGWLQEGVII 312


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 125 KNLFVTNNYKQFKLELTKIGLAEVIH 202
           +N+ +TN+   F L+++  GLA+VIH
Sbjct: 298 ENILITND---FHLKISDFGLAKVIH 320


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 330 LHEYCLKVIFSKDSLIILRLTFE*HYFHH 244
           ++EY +KV + +++  I R   +  +FHH
Sbjct: 190 VYEYLIKVSYEENTFFIARKYSDFSHFHH 218


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 110 VYLLEKNLFVTNNYKQFKLELTKIGLAEVIH 202
           V L E+N+F   +Y +F+       LAE+IH
Sbjct: 632 VNLGERNVFRNLDYTKFEWHFVSCHLAEMIH 662


>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 111 TYNLYWCKVFEIYMTSI 61
           TY+L +C VF  Y+TSI
Sbjct: 165 TYDLSFCTVFHGYLTSI 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,500,394
Number of Sequences: 5004
Number of extensions: 50900
Number of successful extensions: 119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)