Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8g05
(641 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
J03824-1|AAA60273.1| 265|Homo sapiens UROS protein. 68 3e-11
BC002573-1|AAH02573.1| 265|Homo sapiens uroporphyrinogen III sy... 68 3e-11
AL360176-2|CAI12087.1| 265|Homo sapiens uroporphyrinogen III sy... 68 3e-11
AF230665-1|AAG36795.1| 265|Homo sapiens uroporphyrinogen III sy... 68 3e-11
AL360176-3|CAI12088.1| 185|Homo sapiens uroporphyrinogen III sy... 56 1e-07
AL360176-5|CAI12090.1| 133|Homo sapiens uroporphyrinogen III sy... 54 3e-07
AL360176-4|CAI12089.1| 139|Homo sapiens uroporphyrinogen III sy... 54 4e-07
BC051751-1|AAH51751.1| 1147|Homo sapiens replication factor C (a... 31 2.6
AY600371-1|AAS94325.1| 1147|Homo sapiens replication factor C (a... 31 2.6
>J03824-1|AAA60273.1| 265|Homo sapiens UROS protein.
Length = 265
Score = 67.7 bits (158), Expect = 3e-11
Identities = 47/147 (31%), Positives = 65/147 (44%), Gaps = 16/147 (10%)
Frame = +1
Query: 247 MKIVLFKGESED------YQRIFRENNFETIFVEPLQFIYINIEELSQKLLQ-NDYDGMI 405
MK++L K ED Y R E + L F ++++ S+KL DY G+I
Sbjct: 1 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLI 60
Query: 406 LTSPRAVEAVSKC---------WDPTKFVIWNSKDVYTVGEMSSQKIKXXXXXXXXXXXX 558
TSPRAVEA C W+ + WN+K VY VG ++ +
Sbjct: 61 FTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVS-KIGLDTEGETC 119
Query: 559 XNAENLSKIILKDKKKTSTFLFPCGNL 639
NAE L++ I + LFPCGNL
Sbjct: 120 GNAEKLAEYICSRESSALPLLFPCGNL 146
>BC002573-1|AAH02573.1| 265|Homo sapiens uroporphyrinogen III
synthase (congenital erythropoietic porphyria) protein.
Length = 265
Score = 67.7 bits (158), Expect = 3e-11
Identities = 47/147 (31%), Positives = 65/147 (44%), Gaps = 16/147 (10%)
Frame = +1
Query: 247 MKIVLFKGESED------YQRIFRENNFETIFVEPLQFIYINIEELSQKLLQ-NDYDGMI 405
MK++L K ED Y R E + L F ++++ S+KL DY G+I
Sbjct: 1 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLI 60
Query: 406 LTSPRAVEAVSKC---------WDPTKFVIWNSKDVYTVGEMSSQKIKXXXXXXXXXXXX 558
TSPRAVEA C W+ + WN+K VY VG ++ +
Sbjct: 61 FTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVS-KIGLDTEGETC 119
Query: 559 XNAENLSKIILKDKKKTSTFLFPCGNL 639
NAE L++ I + LFPCGNL
Sbjct: 120 GNAEKLAEYICSRESSALPLLFPCGNL 146
>AL360176-2|CAI12087.1| 265|Homo sapiens uroporphyrinogen III
synthase (congenital erythropoietic porphyria) protein.
Length = 265
Score = 67.7 bits (158), Expect = 3e-11
Identities = 47/147 (31%), Positives = 65/147 (44%), Gaps = 16/147 (10%)
Frame = +1
Query: 247 MKIVLFKGESED------YQRIFRENNFETIFVEPLQFIYINIEELSQKLLQ-NDYDGMI 405
MK++L K ED Y R E + L F ++++ S+KL DY G+I
Sbjct: 1 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLI 60
Query: 406 LTSPRAVEAVSKC---------WDPTKFVIWNSKDVYTVGEMSSQKIKXXXXXXXXXXXX 558
TSPRAVEA C W+ + WN+K VY VG ++ +
Sbjct: 61 FTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVS-KIGLDTEGETC 119
Query: 559 XNAENLSKIILKDKKKTSTFLFPCGNL 639
NAE L++ I + LFPCGNL
Sbjct: 120 GNAEKLAEYICSRESSALPLLFPCGNL 146
>AF230665-1|AAG36795.1| 265|Homo sapiens uroporphyrinogen III
synthase protein.
Length = 265
Score = 67.7 bits (158), Expect = 3e-11
Identities = 47/147 (31%), Positives = 65/147 (44%), Gaps = 16/147 (10%)
Frame = +1
Query: 247 MKIVLFKGESED------YQRIFRENNFETIFVEPLQFIYINIEELSQKLLQ-NDYDGMI 405
MK++L K ED Y R E + L F ++++ S+KL DY G+I
Sbjct: 1 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLI 60
Query: 406 LTSPRAVEAVSKC---------WDPTKFVIWNSKDVYTVGEMSSQKIKXXXXXXXXXXXX 558
TSPRAVEA C W+ + WN+K VY VG ++ +
Sbjct: 61 FTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVS-KIGLDTEGETC 119
Query: 559 XNAENLSKIILKDKKKTSTFLFPCGNL 639
NAE L++ I + LFPCGNL
Sbjct: 120 GNAEKLAEYICSRESSALPLLFPCGNL 146
>AL360176-3|CAI12088.1| 185|Homo sapiens uroporphyrinogen III
synthase (congenital erythropoietic porphyria) protein.
Length = 185
Score = 55.6 bits (128), Expect = 1e-07
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Frame = +1
Query: 388 DYDGMILTSPRAVEAVSKC---------WDPTKFVIWNSKDVYTVGEMSSQKIKXXXXXX 540
DY G+I TSPRAVEA C W+ + WN+K VY VG ++ +
Sbjct: 27 DYGGLIFTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVS-KIGLD 85
Query: 541 XXXXXXXNAENLSKIILKDKKKTSTFLFPCGNL 639
NAE L++ I + LFPCGNL
Sbjct: 86 TEGETCGNAEKLAEYICSRESSALPLLFPCGNL 118
>AL360176-5|CAI12090.1| 133|Homo sapiens uroporphyrinogen III
synthase (congenital erythropoietic porphyria) protein.
Length = 133
Score = 54.4 bits (125), Expect = 3e-07
Identities = 41/134 (30%), Positives = 58/134 (43%), Gaps = 16/134 (11%)
Frame = +1
Query: 247 MKIVLFKGESED------YQRIFRENNFETIFVEPLQFIYINIEELSQKLLQ-NDYDGMI 405
MK++L K ED Y R E + L F ++++ S+KL DY G+I
Sbjct: 1 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLI 60
Query: 406 LTSPRAVEAVSKC---------WDPTKFVIWNSKDVYTVGEMSSQKIKXXXXXXXXXXXX 558
TSPRAVEA C W+ + WN+K VY VG ++ +
Sbjct: 61 FTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVS-KIGLDTEGETC 119
Query: 559 XNAENLSKIILKDK 600
NAE L++ I K
Sbjct: 120 GNAEKLAEYICSSK 133
>AL360176-4|CAI12089.1| 139|Homo sapiens uroporphyrinogen III
synthase (congenital erythropoietic porphyria) protein.
Length = 139
Score = 54.0 bits (124), Expect = 4e-07
Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 16/140 (11%)
Frame = +1
Query: 247 MKIVLFKGESED------YQRIFRENNFETIFVEPLQFIYINIEELSQKLLQ-NDYDGMI 405
MK++L K ED Y R E + L F ++++ S+KL DY G+I
Sbjct: 1 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLI 60
Query: 406 LTSPRAVEAVSKC---------WDPTKFVIWNSKDVYTVGEMSSQKIKXXXXXXXXXXXX 558
TSPRAVEA C W+ + WN+K VY VG ++ +
Sbjct: 61 FTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVS-KIGLDTEGETC 119
Query: 559 XNAENLSKIILKDKKKTSTF 618
NAE L++ I ++ F
Sbjct: 120 GNAEKLAEYICSSEEVKGIF 139
>BC051751-1|AAH51751.1| 1147|Homo sapiens replication factor C
(activator 1) 1, 145kDa protein.
Length = 1147
Score = 31.5 bits (68), Expect = 2.6
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +3
Query: 369 SETTAKRLRWDDIDQPASCRSCVKVLGPNKICHLELERCVHSWRDELSKNKIVTRFGRAR 548
SE + L W D +P S ++ + G ++ C +L R + +W+ S++K +FG+
Sbjct: 577 SENKVENLLWVDKYKPTSLKTIIGQQG-DQSCANKLLRWLRNWQKSSSEDKKHAKFGKFS 635
Query: 549 G 551
G
Sbjct: 636 G 636
>AY600371-1|AAS94325.1| 1147|Homo sapiens replication factor C
(activator 1) 1, 145kDa protein.
Length = 1147
Score = 31.5 bits (68), Expect = 2.6
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +3
Query: 369 SETTAKRLRWDDIDQPASCRSCVKVLGPNKICHLELERCVHSWRDELSKNKIVTRFGRAR 548
SE + L W D +P S ++ + G ++ C +L R + +W+ S++K +FG+
Sbjct: 577 SENKVENLLWVDKYKPTSLKTIIGQQG-DQSCANKLLRWLRNWQKSSSEDKKHAKFGKFS 635
Query: 549 G 551
G
Sbjct: 636 G 636
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,445,369
Number of Sequences: 237096
Number of extensions: 1520867
Number of successful extensions: 2483
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2471
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -