Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8g01
         (692 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7I3C5 Cluster: Polysaccharide biosynthesis protein; n=...    33   5.0  

>UniRef50_A7I3C5 Cluster: Polysaccharide biosynthesis protein; n=1;
           Campylobacter hominis ATCC BAA-381|Rep: Polysaccharide
           biosynthesis protein - Campylobacter hominis (strain
           ATCC BAA-381 / LMG 19568 / NCTC 13146 /CH001A)
          Length = 471

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 29/89 (32%), Positives = 38/89 (42%)
 Frame = -1

Query: 491 VHTENKTQYRVIGKLCTKALLISLRNLFQLKHEIIFQQFQYITYKKNIKMLFY*C*EYNF 312
           ++T NK +Y  I   C   L I L  LF  K ++    F YI            C  Y+ 
Sbjct: 349 INTINKNKYLFIATACGATLNIILLYLFIYKFKVFAVAFSYII-----------C--YSL 395

Query: 311 DCVKMLL*CIPTLSLER*IMNIFTYLFIL 225
            C  M+L    T  L   ++NI  YLFIL
Sbjct: 396 VCFIMVLVINKTFKLNIKMLNIMLYLFIL 424


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 545,504,715
Number of Sequences: 1657284
Number of extensions: 9351036
Number of successful extensions: 16642
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 16215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16637
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)