Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f24
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    33   0.029
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    30   0.20 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   0.62 
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    28   0.83 
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    27   1.1  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   1.9  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    26   3.3  
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    25   5.8  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.7  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   7.7  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    25   7.7  

>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 32.7 bits (71), Expect = 0.029
 Identities = 19/96 (19%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
 Frame = +3

Query: 93  IHNFSIQGTKHFSNGNETRRVVISEDVSEMIPDFFFKHNSHRKLTTN---YTNHRKPNLK 263
           +++ S      +S+  ++  V+  ED ++++   +FKHN+          Y  H+ P+++
Sbjct: 61  VNDSSTDSLIRWSDRGDSFLVIGHEDFAKLVLPRYFKHNNFSSFVRQLNMYGFHKVPHIQ 120

Query: 264 SNVFDKMLSDEMLSMKQQSHEKDMTYSPSILTWNKA 371
             V      +E+L     + ++D      ++T  KA
Sbjct: 121 QGVLQSDSPNELLEFANPNFQRDQPELLCLVTRKKA 156


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 29.9 bits (64), Expect = 0.20
 Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
 Frame = +3

Query: 6   KNLHLNLLLCEFVMIF--VFH-----ILVFTIFLIEIHNFSIQGTKHFSNGNETRRVVIS 164
           KNL   + LC  ++++   F+     +  +++ ++ I   +I+G+ +F N   +  + ++
Sbjct: 339 KNLSSKIKLCNHILMYQATFNEVKNFLQTYSLNMLSIEMENIEGSLYFGNAQLSNLICVN 398

Query: 165 EDVSEMIPDFF 197
           + +SE  P FF
Sbjct: 399 QYLSEQRPVFF 409


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 0.62
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = +3

Query: 132  NGNETRRVVISEDVSEMIPDFFFKHNSHRKLTTNYTNHRKPNLKSNVFDKMLSDEMLSMK 311
            NGNE   V+  E +     +F    N  + L  N T++RKP    N   K+  +      
Sbjct: 891  NGNEVPAVLPPELIPPSTRNFTESLNQVKNLIKNDTSNRKPFGAENQ-SKLKKNSFYDNP 949

Query: 312  QQSHEKDMT 338
             ++ EKD T
Sbjct: 950  SETTEKDAT 958


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = +3

Query: 222 LTTNYTNHRKPNLKSNVFDKMLSDEMLSMKQQSHEKDMTYSPS 350
           +  NY NH  PN++ +  + ++             K +TY PS
Sbjct: 253 MNPNYVNHSLPNVRPHTLESVMPHNCTKNAMDLLHKMLTYVPS 295


>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 156 VISEDVSEMI-PDFFFKHNSHRKLTTNYTNHRKPNLKSNVFDKMLSDEML 302
           +I   + E+I    F   +  RKL  N   HRKP +K+   D +LS + L
Sbjct: 229 IIKSKLKELIGTSIFLAESRFRKLEANNAFHRKPIIKNR--DVVLSGKFL 276


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 17/73 (23%), Positives = 31/73 (42%)
 Frame = +3

Query: 138 NETRRVVISEDVSEMIPDFFFKHNSHRKLTTNYTNHRKPNLKSNVFDKMLSDEMLSMKQQ 317
           N T ++V  + + E++P  FF  N      T   N  + NL+ + F       + S    
Sbjct: 782 NSTAQLVSPDSIQELVPSTFFSSN------TKKDNIEEENLEPHSFS--FDSTLASSSDN 833

Query: 318 SHEKDMTYSPSIL 356
             ++D   + SI+
Sbjct: 834 DEQRDFASNSSIV 846


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
 Frame = +3

Query: 69  VFTIFLIEIHNFSIQGTKHFSNGNETRRVVISEDVSEMIPDFFFKHNSHRKLTTNYT-NH 245
           V+T F+ E++++  +   H S GN   R      +  ++        S    + NY+ +H
Sbjct: 94  VWTKFISEVNSYDKEKENHLSTGNHELRRTTPLKIGPLLLTRIGLLKSKNTASNNYSVDH 153

Query: 246 RKPNLKSNVFDKMLSDEMLSMKQQSHEKDMTYSP 347
              NL ++  + +L+ ++ + +  SH + +   P
Sbjct: 154 IVSNLAND--NTLLNRQVSTEEWNSHLRHLLNIP 185


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = +3

Query: 195 FFKHNSHRKLTTNYTNHRKPNLKSNV----FDKMLSDEMLSMKQQSHEKDMTYSPSILTW 362
           +F     + + T Y     P+L S +    FD   ++  +S  ++ HEK    +  + T+
Sbjct: 507 YFSKIDWKNVRTAYRPPFVPDLNSEIDAGYFDDFTNENDMSKYKEVHEKQAAIANMVNTF 566

Query: 363 NK 368
           NK
Sbjct: 567 NK 568


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +3

Query: 249 KPNLKSNVFDKMLSD-EMLSMKQQSHEKDMTY--SPSILTWNKASIPTPTLELKQKW 410
           K  L  NV D   +D E+ S  +  ++  ++   +P  L  N  ++P P+L   + W
Sbjct: 106 KAQLNVNVNDGKPNDIELSSTSKTENDPPLSLHTTPDDLQGNGVNVPNPSLSASRSW 162


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 258  LKSNVFDKMLSDEMLSMKQQSHEKDMTYSPSILT 359
            L SNV  K L+DE+L++    +  D   + +I T
Sbjct: 1163 LNSNVLSKPLTDELLALATSLNAHDYQTASNIQT 1196


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
 Frame = +3

Query: 219 KLTTNYTNHRKPNLKSN-VFDKMLSDEMLSMKQQSHEKDMTYSPSILTWNKASIPTPTLE 395
           K   N+T H +     N +F +++ + M+         D T   SI  W K      +  
Sbjct: 477 KAVQNFTTHAENGYYDNTIFHRIIKNFMIQGGDPLG--DGTGGESI--WKKDFEDEISPN 532

Query: 396 LKQKWPVIEFLANSGRSENDSQ 461
           LK   P    +ANSG + N SQ
Sbjct: 533 LKHDRPFTVSMANSGPNTNGSQ 554


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,900,539
Number of Sequences: 5004
Number of extensions: 38391
Number of successful extensions: 153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)