Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f24
         (470 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0916 - 28762214-28762414,28763144-28763242,28763573-287639...    32   0.27 
12_01_0052 + 433203-433292,433409-433815,434435-434447,437081-43...    27   5.8  
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042...    27   5.8  
11_03_0015 + 8975199-8975277,8975574-8975607,8976744-8976957,897...    27   7.6  
10_08_0368 + 17241156-17241308,17243745-17243993,17244104-172442...    27   7.6  

>03_05_0916 -
           28762214-28762414,28763144-28763242,28763573-28763998,
           28764259-28764501,28764706-28764927,28765392-28765721,
           28767380-28767800,28768292-28768404,28769224-28769367,
           28769439-28769570,28769802-28770013,28770983-28771505
          Length = 1021

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +3

Query: 141 ETRRVVISEDVSEMIPDFFFKHNSHRKLTTNYTNHRKPNLKSNVFDKMLSDEMLSMKQQ- 317
           E+   V+  + S+ I + F   N    L  +Y     PNL+S   + MLS  +  +    
Sbjct: 637 ESSLYVLERNPSDTI-ELFLSENVPADLVNSYLKQHAPNLQSTYLELMLSMSVSGINPNL 695

Query: 318 SHEKDMTYSPSILTWNK 368
            +E    Y   +L W+K
Sbjct: 696 QNELVQLYLSEVLDWHK 712


>12_01_0052 +
           433203-433292,433409-433815,434435-434447,437081-437473
          Length = 300

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +3

Query: 327 KDMTYSPSILTWNKASIPTPTLELKQKWPVIEFLANSGR 443
           K +  S SI+T N    P PTLE+K+   +I  L N GR
Sbjct: 37  KRLCKSQSIMTVN-GQFPGPTLEIKEGDSLIINLINRGR 74


>11_06_0061 -
           19702893-19703869,19703960-19704098,19704166-19704287,
           19704362-19704416,19704508-19704624,19704718-19705413,
           19706358-19706393,19707190-19708236
          Length = 1062

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 186 PDFFFKHNSHRKLTTNYTNHRKPNLKSNVFDKMLSDEMLSMKQQSHEKD 332
           P F    N  R    N     + NL S++FD+ L+  + S+ Q +H +D
Sbjct: 728 PGFESVVNGKRSRDWNTDGFSEVNLNSSLFDEELTATINSICQDNHNRD 776


>11_03_0015 +
           8975199-8975277,8975574-8975607,8976744-8976957,
           8977144-8977182,8977266-8977358,8977448-8977546,
           8978163-8978264,8978301-8978378,8978696-8978779,
           8979172-8979237,8979861-8979947
          Length = 324

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 222 LTTNYTNHRKPNLKSNVFDKMLSDEMLSMKQQSHEKDMTYS 344
           L ++YT  + PN +  V    LS    S+K+  HE +  +S
Sbjct: 53  LFSSYTKDKHPNSRVEVLPMDLSSGEESLKEHVHEAESLFS 93


>10_08_0368 +
           17241156-17241308,17243745-17243993,17244104-17244206,
           17244291-17244390,17244556-17244666,17245302-17245407,
           17245550-17245640,17245951-17246092,17246370-17246517,
           17246597-17246706,17247131-17247287,17247439-17247564,
           17247646-17247786
          Length = 578

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 156 VISEDVSEMIPDFFFKH 206
           V+SE V E+IP F+FK+
Sbjct: 123 VVSEPVREVIPQFYFKY 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,772,302
Number of Sequences: 37544
Number of extensions: 198928
Number of successful extensions: 507
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)