Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f24
         (470 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27918| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_58969| Best HMM Match : Avidin (HMM E-Value=3.7)                    29   2.6  
SB_46110| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_10877| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_27468| Best HMM Match : Peptidase_C48 (HMM E-Value=0.0026)          28   3.4  
SB_40458| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_1296| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.9  
SB_58083| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_55980| Best HMM Match : rve (HMM E-Value=3.8e-23)                   27   7.8  

>SB_27918| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/72 (26%), Positives = 31/72 (43%)
 Frame = +3

Query: 102 FSIQGTKHFSNGNETRRVVISEDVSEMIPDFFFKHNSHRKLTTNYTNHRKPNLKSNVFDK 281
           FSI+  K  S      +V   EDV+ +   +  K  S +      +   + NLK    D 
Sbjct: 180 FSIRADKPKSKPKTDSQVEDEEDVTNLELSYVKKFQSFQDRKIKLSKEEQSNLKKARLDG 239

Query: 282 MLSDEMLSMKQQ 317
            L +EML  +++
Sbjct: 240 RLHEEMLDRREK 251


>SB_58969| Best HMM Match : Avidin (HMM E-Value=3.7)
          Length = 706

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/72 (20%), Positives = 30/72 (41%)
 Frame = +3

Query: 117 TKHFSNGNETRRVVISEDVSEMIPDFFFKHNSHRKLTTNYTNHRKPNLKSNVFDKMLSDE 296
           TKH  N ++T R+             + +H +  +   NYT H   +  ++++ + +SD 
Sbjct: 338 TKHV-NASQTARIYTQHLNESQTVRIYTQHVNDSQTARNYTQHVNDSQTAHIYTQHVSDS 396

Query: 297 MLSMKQQSHEKD 332
             +     H  D
Sbjct: 397 QTARIYTQHVND 408


>SB_46110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 984

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 309 KQQSHEKDMTYSPSILTWNKASIPTPT 389
           KQQ H  + T + S+LT N  S  TPT
Sbjct: 228 KQQEHPPNTTLNESLLTSNSGSSQTPT 254


>SB_10877| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +3

Query: 258 LKSNVFDKMLSDEMLSMKQQSHEKDMTYSPSILTWNKASIPTPTLELKQKWPVIEFLA 431
           LK N  D   +DEML++ +Q +    TY   +L++  A   +   E K+K    E LA
Sbjct: 49  LKHNGLD---ADEMLAINEQKYGVKSTYDSEMLSYTTALEKSSNQEFKEKERKAERLA 103


>SB_27468| Best HMM Match : Peptidase_C48 (HMM E-Value=0.0026)
          Length = 766

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
 Frame = +3

Query: 165 EDVSEMIPDFFFKHNSHRKLTTNYTNHRKPNLKSNVFDKML-----SDEMLSMKQQSHEK 329
           E ++++I DF+ K+  H KLT    +  + ++ S+ F K L     S+  LS+ ++ H +
Sbjct: 655 EFLNDVIIDFYLKYIFHEKLTD--FDRERTHIFSSFFYKRLTQRASSETNLSVIERMHSQ 712

Query: 330 DMTYSPSILTWNKASIPTPTLE 395
             T++  +  + K  I  P  E
Sbjct: 713 VKTWTKYVDIFQKDFIVVPINE 734


>SB_40458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 336 TYSPSILTWNKASIPTPTLELKQKWPVIEFLAN 434
           +YS   +   ++ IPTP  EL + WP +E +AN
Sbjct: 510 SYSRDSILARRSQIPTP--ELARTWPHLEQIAN 540


>SB_1296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 954

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 180 MIPDFFFKHNSHRKLTTNYTNHRKPNLKSNVFDKMLSDEM 299
           M+PD   K +  R      ++ R P++K +VFD+ML+ ++
Sbjct: 704 MLPDV--KISDERSPDVKLSDERSPDVKVSVFDEMLAGDV 741


>SB_58083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 415 TGHFCFNSNVGVGILALFHVRIEG 344
           TG+F  N N+  G L LFH  + G
Sbjct: 697 TGYFLMNFNIIAGTLVLFHSALVG 720


>SB_55980| Best HMM Match : rve (HMM E-Value=3.8e-23)
          Length = 1268

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 8/25 (32%), Positives = 19/25 (76%)
 Frame = +3

Query: 396 LKQKWPVIEFLANSGRSENDSQQNN 470
           ++++W + EF+ N+G+ E +++Q N
Sbjct: 105 IEKRWNLTEFIENAGQKEENNKQVN 129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,265,728
Number of Sequences: 59808
Number of extensions: 249786
Number of successful extensions: 606
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)