Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f24
         (470 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-1|CAA86513.1|  437|Caenorhabditis elegans Hypothetical pr...    30   0.73 
AF082012-1|AAD03024.1|  437|Caenorhabditis elegans UDP-N-acetylg...    30   0.73 
AF016446-13|AAC24172.1|  349|Caenorhabditis elegans Seven tm rec...    29   1.7  
U58760-9|AAK31465.1|  654|Caenorhabditis elegans Dishevelled rel...    28   2.9  
AF039049-1|AAB94253.1|  299|Caenorhabditis elegans Serpentine re...    28   2.9  
Z93386-2|CAB07647.1|  387|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AL132948-13|CAD31815.2|  509|Caenorhabditis elegans Hypothetical...    28   3.9  
AF273839-1|AAG15186.1|  470|Caenorhabditis elegans nuclear recep...    28   3.9  
Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AF016438-12|AAK84532.1|  407|Caenorhabditis elegans Nuclear horm...    27   5.1  
Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AF078157-17|AAG24072.1| 1062|Caenorhabditis elegans Hypothetical...    27   6.8  
Z54327-8|CAA91121.2|  451|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>Z46381-1|CAA86513.1|  437|Caenorhabditis elegans Hypothetical
           protein M01F1.1 protein.
          Length = 437

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 126 FSNGNETRRVVISEDVSEMIPDFFFKHNSHRKL 224
           FSN N    V+I+ED  ++ PDFF   ++ R L
Sbjct: 183 FSNSNNYSSVIITEDDLDIAPDFFSYFSNTRYL 215


>AF082012-1|AAD03024.1|  437|Caenorhabditis elegans
           UDP-N-acetylglucosamine:a-3-D-mannosideb-1,
           2-N-acetylglucosaminyltransferase I protein.
          Length = 437

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 126 FSNGNETRRVVISEDVSEMIPDFFFKHNSHRKL 224
           FSN N    V+I+ED  ++ PDFF   ++ R L
Sbjct: 183 FSNSNNYSSVIITEDDLDIAPDFFSYFSNTRYL 215


>AF016446-13|AAC24172.1|  349|Caenorhabditis elegans Seven tm
           receptor protein 211 protein.
          Length = 349

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
 Frame = +3

Query: 6   KNLHLNLLLC----EFVMIFVFHILVFTIFLIEIHNFSIQGTKHFSNGNETRRVVISEDV 173
           +NLH  L         + IF+ HI   T+F+    NF       F +G  +  + +   +
Sbjct: 244 QNLHSQLFYALVAQAMIPIFLMHIPALTMFIFTFLNFD----AGFLSGTVSLTIALFPTL 299

Query: 174 SEMIPDFFFKHNSHRKLTTNYTNHRKPNLKSNVFDKML 287
             +     F H  +RK  TNY   R   ++   F + L
Sbjct: 300 DPLPTMLIFCH--YRKAITNYIRTRYKKVRKTKFCRCL 335


>U58760-9|AAK31465.1|  654|Caenorhabditis elegans Dishevelled
           related protein 2 protein.
          Length = 654

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +3

Query: 186 PDFFFKHNSHRKLTTNYTNHRKPNLKSNVFDKML-SDEMLSMKQQSHEKDMTYSPSILTW 362
           P  + +H  H K    + +HR+ + + + FD    SD+        +++D   S SI   
Sbjct: 252 PQAYERHLPHMKHNNRHNHHRQNHYEESTFDVTTESDDHYRDGVTYYDEDEDDSRSI--- 308

Query: 363 NKASIPTPTLELKQKW 410
           N        + LKQKW
Sbjct: 309 NTDLTSVSQVHLKQKW 324


>AF039049-1|AAB94253.1|  299|Caenorhabditis elegans Serpentine
           receptor, class x protein68 protein.
          Length = 299

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 33  CEFVMIFVFHILVFTIFLIEIHNF 104
           C FV++F + + VFT F I I+ F
Sbjct: 78  CGFVILFCYELSVFTHFAISINRF 101


>Z93386-2|CAB07647.1|  387|Caenorhabditis elegans Hypothetical
           protein R11H6.3 protein.
          Length = 387

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +3

Query: 261 KSNVFDKMLSDEMLSMKQQSHEK-DMTYSPSILTWNKASIPTPTL 392
           ++  + K +S+ ML+ K++ +    +T SP+  T N+ ++P P L
Sbjct: 69  RAGFYKKRVSNPMLTPKKKRNSSASVTSSPARSTTNRLAVPNPPL 113


>AL132948-13|CAD31815.2|  509|Caenorhabditis elegans Hypothetical
           protein Y39B6A.17a protein.
          Length = 509

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +3

Query: 150 RVVISEDVSEMIPDFFFK-H-NSHRKLTTNYTNHRKPNLKSNVFDKMLSDEMLSMKQQSH 323
           R+ I +   E++  +    H N HRKL  N  + RK ++++ V  + L+D       ++ 
Sbjct: 397 RIFIDKPYDELLEKYVLNLHPNDHRKLEKNLADFRKFHMENVVPQRFLADFYFQGTFENE 456

Query: 324 EK 329
           EK
Sbjct: 457 EK 458


>AF273839-1|AAG15186.1|  470|Caenorhabditis elegans nuclear receptor
           NHR-95 protein.
          Length = 470

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +3

Query: 150 RVVISEDVSEMIPDFFFK-H-NSHRKLTTNYTNHRKPNLKSNVFDKMLSDEMLSMKQQSH 323
           R+ I +   E++  +    H N HRKL  N  + RK ++++ V  + L+D       ++ 
Sbjct: 358 RIFIDKPYDELLEKYVLNLHPNDHRKLEKNLADFRKFHMENVVPQRFLADFYFQGTFENE 417

Query: 324 EK 329
           EK
Sbjct: 418 EK 419


>Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical
           protein T04D3.2 protein.
          Length = 604

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +3

Query: 255 NLKSNVFDKMLSDEMLSMKQQSHEKDMTYSPSILTWNKASIPTPTLELKQKWPVIEFLAN 434
           NL+SN+ +K       +   Q+H  D+ Y P+ +T +         +L Q  PV+E +  
Sbjct: 362 NLESNLMEKYYYQAEFNSLVQTHCNDLIYDPAKITQSHVLAVINRNDLPQ--PVVEVIVR 419

Query: 435 S 437
           +
Sbjct: 420 N 420


>AF016438-12|AAK84532.1|  407|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 134 protein.
          Length = 407

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 19/90 (21%), Positives = 37/90 (41%)
 Frame = +3

Query: 141 ETRRVVISEDVSEMIPDFFFKHNSHRKLTTNYTNHRKPNLKSNVFDKMLSDEMLSMKQQS 320
           +  R ++  DVS  IP  F        L+      R+P+ K  +  K+  +E L + +Q+
Sbjct: 140 DVARDILKRDVSTKIPYQFHNSLERLALSLEEIRSREPDEKIKMLRKIGQEESLLIWEQA 199

Query: 321 HEKDMTYSPSILTWNKASIPTPTLELKQKW 410
             + + +  +   +N     +    LK  W
Sbjct: 200 FLRAVEWFSNFSEFNALDELSKMTILKSAW 229


>Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical protein
            F31C3.3 protein.
          Length = 2029

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 90   EIHNFSIQGTKHFSNGNETRRVVISEDVSEMIPDFFFKHNSHRKLT 227
            +I NF    T   SN  +    V S  ++ ++PD  +KH  HR  T
Sbjct: 1757 QIRNFLYTRTVRDSNCGDHLFEVGSVRITNLLPDSIYKHALHRDET 1802


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical protein
            R04E5.8a protein.
          Length = 997

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 23/127 (18%), Positives = 50/127 (39%)
 Frame = +3

Query: 84   LIEIHNFSIQGTKHFSNGNETRRVVISEDVSEMIPDFFFKHNSHRKLTTNYTNHRKPNLK 263
            +++  N  I  +K   + ++   ++ S   + ++      H+   K + +     K + K
Sbjct: 630  IVDAENAGIASSKASKSADDKIEILASHGSNSILKS---AHDQASKASKSSRKRSKKSKK 686

Query: 264  SNVFDKMLSDEMLSMKQQSHEKDMTYSPSILTWNKASIPTPTLELKQKWPVIEFLANSGR 443
            SN      SDE L   Q       T S S ++ + +     T E     P  E ++   +
Sbjct: 687  SNETSSSSSDERLIHSQSPPTPQNTTSSSDVSSSSSGGSASTSESSSSAPSAEQVSTPKK 746

Query: 444  SENDSQQ 464
            S+ + ++
Sbjct: 747  SKKNKEK 753


>AF078157-17|AAG24072.1| 1062|Caenorhabditis elegans Hypothetical
            protein F25E5.1 protein.
          Length = 1062

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = +3

Query: 339  YSPSILTWNKASIPTPTLE----LKQKWPVIEF 425
            Y P I+ W+++ IP P +     + + WP  +F
Sbjct: 908  YRPGIILWHRSPIPNPQIHHVRIITEMWPKNDF 940


>Z54327-8|CAA91121.2|  451|Caenorhabditis elegans Hypothetical
           protein C26D10.3 protein.
          Length = 451

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 11/128 (8%)
 Frame = +3

Query: 108 IQGTKHFSNGNETRRVVISEDVSEMI---------PDFFFKHNSHRKLTTNYTNHRKPNL 260
           I G KH       + V  SE VSE +         PD +      +K++    N     L
Sbjct: 195 IDGNKHDGQQKHLQHVAASESVSENMNNPSGPALGPD-WCSQIDFQKISEKSENRSVTIL 253

Query: 261 KSNVFDKMLSDEMLSMKQQSHEK--DMTYSPSILTWNKASIPTPTLELKQKWPVIEFLAN 434
           ++ V     + + LS+     EK  D   +P I  W  A   T   E+     +++   N
Sbjct: 254 RNCVITSTDTSQNLSVHYMDKEKMADNQLNPDIFIW--AGGVTANSEVWAMNKMLQITEN 311

Query: 435 SGRSENDS 458
           SG   ND+
Sbjct: 312 SGIKVNDA 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,335,991
Number of Sequences: 27780
Number of extensions: 213017
Number of successful extensions: 713
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)