Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f24
         (470 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   0.94 
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    24   0.94 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   0.94 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.8  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   8.8  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 9/48 (18%), Positives = 21/48 (43%)
 Frame = +3

Query: 249 KPNLKSNVFDKMLSDEMLSMKQQSHEKDMTYSPSILTWNKASIPTPTL 392
           +P L+ ++++KM+  +  +   +         P  + W +    T TL
Sbjct: 365 RPKLRKDMYEKMVQVDPTAPNAEERRVQGVTKPRYMVWRETISSTATL 412


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 9/48 (18%), Positives = 21/48 (43%)
 Frame = +3

Query: 249 KPNLKSNVFDKMLSDEMLSMKQQSHEKDMTYSPSILTWNKASIPTPTL 392
           +P L+ ++++KM+  +  +   +         P  + W +    T TL
Sbjct: 280 RPKLRKDMYEKMVQVDPTAPNAEERRVQGVTKPRYMVWRETISSTATL 327


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 144 FHSRC*NVWSLVLKNCVSRL 85
           +H RC   W  +   CVSR+
Sbjct: 17  YHQRCSRDWFRISAGCVSRI 36



 Score = 23.8 bits (49), Expect = 0.94
 Identities = 9/48 (18%), Positives = 21/48 (43%)
 Frame = +3

Query: 249 KPNLKSNVFDKMLSDEMLSMKQQSHEKDMTYSPSILTWNKASIPTPTL 392
           +P L+ ++++KM+  +  +   +         P  + W +    T TL
Sbjct: 599 RPKLRKDMYEKMVQVDPTAPNAEERRVQGVTKPRYMVWRETISSTATL 646


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 120 WSLVLKNCVSRLGIL*TLKCETQKS*QTHIIINLN 16
           + + LKN  +R G    L+CE Q      I+ N+N
Sbjct: 779 FEIKLKNQTARRGEPAVLQCEAQGEKPIGILWNMN 813


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +3

Query: 204 HNSHRKLTTNYTNHRKPNLKSNVFDKM 284
           HN++     NY N+   N   N + K+
Sbjct: 91  HNNNNYNNNNYNNYNYNNNNYNNYKKL 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,138
Number of Sequences: 438
Number of extensions: 2324
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)