Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f23
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi...    43   4e-05
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    28   1.1  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    27   1.5  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    27   2.0  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   6.1  

>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
           Pin1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 175

 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
 Frame = +1

Query: 10  EKQSKCLEALEKL-KAGQ-KFPDVAAAYSE-DKARQGGDLGWMTRGSMVGPFQDAAFALP 180
           E+  K  E  E+L K+G     D+A   S+   AR+GG+LG   R  M  PF+DAAFAL 
Sbjct: 95  EEARKLAEHYEQLLKSGSVSMHDLAMKESDCSSARRGGELGEFGRDEMQKPFEDAAFAL- 153

Query: 181 ISSVTNPVYTNPPVKTKFGYHII 249
                 P   +  V+T  G+HII
Sbjct: 154 -----KPGEISGVVETSSGFHII 171


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 423  DFSSRDYGL-KMSFLRLYQMMHITIFLALIYFCNICIWYINE*KFIAXKILVT 578
            DF+ + +G+ + +F  LY ++H+   L + Y C I   Y+    F+   I  T
Sbjct: 1261 DFAVQKHGIWRRTFTGLY-IVHLLFLLTIFYPCPIAYTYVRNSIFLILSICYT 1312


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +3

Query: 351 QFDKDLALLPDAQTSTQSFDDDMEDFSSRDYGLKMSFLRLY 473
           +FD++     +      +FDDD+ + +  +  LK++ L +Y
Sbjct: 172 EFDQEYMNEAELPIKDMNFDDDLHESAKHEMQLKLTMLNIY 212


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 273 LSFLPFDHNYMITKFRFNWRVCVNWISY 190
           ++F    HNY     RF W VC  W  Y
Sbjct: 194 IAFGGLHHNYRGRSARFEWVVCFLWSIY 221


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = -1

Query: 456 SSSNHNLC*RNLPCHHQRTVLKFGHQGAELNLYQTALGGYISFP**TTKVLPKNIQIRKT 277
           S+++H+     LPC +  T   F  +    N+      GYI+    + KV  +N  I+K 
Sbjct: 233 SNASHSSSTSELPCTYGNTSSIFQVKNEMSNIKSAISEGYIAHDQQSKKVSVQN--IKKE 290

Query: 276 FLSFLPFD 253
           FL  +PF+
Sbjct: 291 FL--IPFE 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,453,302
Number of Sequences: 5004
Number of extensions: 50223
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)