Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f23
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0095 - 14556508-14556550,14556824-14556966,14557703-145577...    66   1e-11
07_03_1741 + 29156076-29156316,29156554-29156676,29156784-291568...    54   1e-07
04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916     45   5e-05
02_05_0490 + 29456825-29457499,29458771-29459057,29460922-294610...    30   1.5  
03_04_0054 + 16883678-16883719,16884667-16884723,16884852-168849...    28   4.7  
11_01_0708 + 5817545-5818957                                           27   8.2  
04_04_1247 - 32043776-32043880,32044296-32044505,32044595-320451...    27   8.2  

>09_04_0095 -
           14556508-14556550,14556824-14556966,14557703-14557744,
           14557940-14558049,14558369-14558519
          Length = 162

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
 Frame = +1

Query: 73  VAAAYSE-DKARQGGDLGWMTRGSMVGPFQDAAFALPISSVTNPVYTNPPVKTKFGYHII 249
           +A  YSE    ++GGDLGW  RG M GPFQD AF+ P+ +      T+ P K+  GYH I
Sbjct: 102 IAQEYSECPSGKKGGDLGWFPRGKMAGPFQDVAFSTPVGA------TSAPFKSTHGYHFI 155

Query: 250 MVEGKK 267
           + EG+K
Sbjct: 156 LCEGRK 161


>07_03_1741 +
           29156076-29156316,29156554-29156676,29156784-29156875,
           29157577-29157677,29157752-29157862,29158254-29158362,
           29158589-29158639,29158758-29158838
          Length = 302

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
 Frame = +1

Query: 10  EKQSKCLEALEK--LKAGQKFPDVAAAYSEDKARQ-GGDLGWMTRGSMVGPFQDAAFALP 180
           E+  + L  LEK  +  G    D+A  YS   +++ GG LGW+ RG MV  F++AAF  P
Sbjct: 105 EQDVRLLVDLEKNIITGGADLSDLAVEYSLCPSKENGGMLGWVRRGQMVPEFEEAAFGAP 164

Query: 181 ISSVTNPVYTNPPVKTKFGYHIIMV 255
           ++ V          KTKFG+H++ V
Sbjct: 165 LNKVVR-------CKTKFGWHLLQV 182


>04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916
          Length = 234

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
 Frame = +1

Query: 40  EKLKAGQ-KFPDVAAAYSE-DKARQGGDLGWMTRGSMVGPFQDAAFALPISSVTNPVYTN 213
           EK+ AG+ KF DVA   S+ + A++GGDLG   RG M   F+ A  AL +  +++ V T+
Sbjct: 165 EKIVAGERKFEDVATEESDCNSAKRGGDLGPFERGKMQKAFEKAVLALKVGEISDVVDTD 224

Query: 214 PPV 222
             V
Sbjct: 225 SGV 227


>02_05_0490 +
           29456825-29457499,29458771-29459057,29460922-29461039,
           29461451-29461972,29462058-29462170,29463033-29463053,
           29463726-29463960,29464218-29464381,29464695-29464776,
           29465077-29465166,29465625-29465858,29466347-29466418,
           29466857-29467000,29467573-29467659,29467940-29468098,
           29469216-29469476,29469789-29469836
          Length = 1103

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1

Query: 19  SKCLEALEKLKAGQKFPDVAAAYSEDKARQGGDLG 123
           SKCL AL  +KAG      AAA +  K +Q G  G
Sbjct: 217 SKCLRALTTIKAGSGGAAAAAAAAAKKKQQQGGAG 251


>03_04_0054 +
           16883678-16883719,16884667-16884723,16884852-16884959,
           16885028-16885102,16885744-16885833,16885950-16886057,
           16886137-16886211,16886371-16886433,16886531-16886924,
           16888539-16888651,16888799-16888829,16888987-16889864
          Length = 677

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 554 EFLLIYVPDANVTEIYQCQKYGNMHHLI*TKETHLQTIISAREIFH 417
           EF  ++ PD N   + +  ++G++H+ I   +   QT+  AR  FH
Sbjct: 78  EFFKVHCPDTNSAYLDKALQFGDLHYQI--NDFKEQTLQLARLAFH 121


>11_01_0708 + 5817545-5818957
          Length = 470

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 540 LCTRCKCYRNISMPEIW*YASFDINEGNSSSNHNLC 433
           L + C  + N+ + EI  +  F++ EG++S+   LC
Sbjct: 382 LLSACAMHNNVDVGEIAAFRLFELEEGSASNYVTLC 417


>04_04_1247 -
           32043776-32043880,32044296-32044505,32044595-32045101,
           32045362-32045583,32046054-32046184,32046737-32047745,
           32047830-32047904,32047995-32048066,32048153-32048328,
           32048494-32048646,32048739-32049234
          Length = 1051

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 399 QSFDDDMEDFSSRDYGLKMSF 461
           Q+FD+DME+ +S  YGL  +F
Sbjct: 510 QNFDEDMEEKNSETYGLCPAF 530


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,209,024
Number of Sequences: 37544
Number of extensions: 303929
Number of successful extensions: 677
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)