Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f23
         (579 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11310| Best HMM Match : Arf (HMM E-Value=0)                         47   1e-05
SB_22578| Best HMM Match : DUF1518 (HMM E-Value=7.1)                   29   2.7  
SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_42869| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_16403| Best HMM Match : Candida_ALS (HMM E-Value=1.7)               27   8.4  
SB_10455| Best HMM Match : DUF888 (HMM E-Value=4.7)                    27   8.4  

>SB_11310| Best HMM Match : Arf (HMM E-Value=0)
          Length = 255

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 21/25 (84%), Positives = 23/25 (92%)
 Frame = +1

Query: 37  LEKLKAGQKFPDVAAAYSEDKARQG 111
           +EKLKAGQKF +VA AYSEDKARQG
Sbjct: 1   MEKLKAGQKFNEVATAYSEDKARQG 25


>SB_22578| Best HMM Match : DUF1518 (HMM E-Value=7.1)
          Length = 117

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 10  EKQSKCLEALEKLKAGQKFPDVAAAYSEDKARQGGDL 120
           ++ S C  A E   A  + P + AA S DK+ Q  DL
Sbjct: 29  QQASTCGTATENKAAAARMPQINAAVSPDKSEQSTDL 65


>SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1994

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 348  EQFDKDLALLPDAQTSTQSFDDDMEDFSSRDYGLKMSFLRLY 473
            EQF+ D  L+P  +T T+ F++D  D     Y  + +   LY
Sbjct: 1877 EQFENDTLLVPWGRTKTEPFENDGGDVVWSPYRAEDTMADLY 1918


>SB_42869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 318 TTKVLPKNIQIRKTFLSFLPFDHNYMITKFRFNWRVC 208
           T +V+ +  Q+    L  L  D ++++  FR NWR C
Sbjct: 440 TARVVGQQNQLPCLELYLLQNDQSFLVFDFRINWRSC 476


>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1864

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 124 WMTRGSMVGPFQDAAFALPISSVTNPVYTNPPVKTKFG-YHII 249
           W+   S  GP++      P   VT+P  ++P +K KFG +H+I
Sbjct: 748 WLNSSSF-GPWEARLGNHPHGWVTDPADSDPWLKVKFGSFHVI 789


>SB_16403| Best HMM Match : Candida_ALS (HMM E-Value=1.7)
          Length = 2372

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 10   EKQSKCLEALEKLKAGQKFPDVAAAYSEDKARQGGDL 120
            ++ S C  A E      + P + AA S DK+ Q  DL
Sbjct: 1544 QQASTCGTATENKAVAARMPQINAAVSPDKSEQSTDL 1580


>SB_10455| Best HMM Match : DUF888 (HMM E-Value=4.7)
          Length = 52

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +3

Query: 423 DFSSRDY----GLKMSFLRLYQMMHITIFLALIYFCNICIW 533
           DFSSRD     G+K+S   LY ++ +   L LI+   I +W
Sbjct: 2   DFSSRDDSNKDGVKLSEKMLYIIIALLAALCLIFVVGIILW 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,453,410
Number of Sequences: 59808
Number of extensions: 345930
Number of successful extensions: 710
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)