Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8f21
(582 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34041| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_35730| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.032
SB_39159| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.52
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.69
SB_14763| Best HMM Match : Zona_pellucida (HMM E-Value=0) 31 0.69
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 31 0.91
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045) 31 0.91
SB_12715| Best HMM Match : Adeno_E1A (HMM E-Value=1.3) 31 0.91
SB_24814| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_57604| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 29 2.1
SB_14102| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0024) 29 2.1
SB_9624| Best HMM Match : PAPA-1 (HMM E-Value=1.2) 29 2.8
SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7) 29 2.8
SB_23760| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_15137| Best HMM Match : SRCR (HMM E-Value=4.9e-28) 29 3.7
SB_13424| Best HMM Match : Pox_A32 (HMM E-Value=0.073) 29 3.7
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 29 3.7
SB_50721| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_50209| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37) 28 4.8
SB_10387| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 28 4.8
SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 28 4.8
SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 28 6.4
SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_46611| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_34373| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_54| Best HMM Match : Actin (HMM E-Value=0) 27 8.5
SB_31502| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38) 27 8.5
>SB_34041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 951
Score = 39.9 bits (89), Expect = 0.001
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Frame = +2
Query: 104 QNDTQRPKSHRARGASNNSYKSKSALPDHAGENCVQKNKTRPNSSNEICSLNVSDDHESS 283
+ND + + G ++NS K+ S P EN V K KT+ S + +N +DD
Sbjct: 659 KNDLNQNRKASMSGKADNSRKTSSGGPV-GNENTVDKGKTKIKSKQQGWFVNSTDDSTGG 717
Query: 284 ASLATTKQRSTATLDKDVAASSS-NIDLYHYLRAPENASVASSVTLNGESETN 439
+ + R + K +A + ++ + N S A+ T NG S TN
Sbjct: 718 IIVKDSTPRKASIPGKQKSAGDEVSTNVRNISVNGSNRSTANEKTSNGTSNTN 770
>SB_35730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 35.5 bits (78), Expect = 0.032
Identities = 23/120 (19%), Positives = 57/120 (47%)
Frame = +2
Query: 98 SVQNDTQRPKSHRARGASNNSYKSKSALPDHAGENCVQKNKTRPNSSNEICSLNVSDDHE 277
+V + + R S+ ++++S S S+ + + + + +SSN S + S
Sbjct: 43 AVSSSSSRSSSNSNNSSNSSSSSSSSSNSSSSSSSSSSSSSSSSSSSNSSSSSSSSSSSS 102
Query: 278 SSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVASSVTLNGESETNCKQNDS 457
SS+S +++ S+++ ++SSS+ + ++S +SS + + S ++ + S
Sbjct: 103 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 162
Score = 34.3 bits (75), Expect = 0.074
Identities = 24/120 (20%), Positives = 54/120 (45%)
Frame = +2
Query: 98 SVQNDTQRPKSHRARGASNNSYKSKSALPDHAGENCVQKNKTRPNSSNEICSLNVSDDHE 277
S + + S + +S++S S S+ + + + + NSS+ S + S
Sbjct: 120 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNSSSSSSSSSSSSSSS 179
Query: 278 SSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVASSVTLNGESETNCKQNDS 457
SS+S +++ S+++ ++SSS+ + + S +SS + + S ++ N S
Sbjct: 180 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNSSSSSSSSSSSSSSSSSNNSS 239
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/110 (19%), Positives = 54/110 (49%)
Frame = +2
Query: 128 SHRARGASNNSYKSKSALPDHAGENCVQKNKTRPNSSNEICSLNVSDDHESSASLATTKQ 307
++ + +S++S S S+ + + + + NSS+ S + S SS+S +++
Sbjct: 56 NNSSNSSSSSSSSSNSSSSSSSSSSSSSSSSSSSNSSSSSSSSSSSSSSSSSSSSSSSSS 115
Query: 308 RSTATLDKDVAASSSNIDLYHYLRAPENASVASSVTLNGESETNCKQNDS 457
S+++ ++SSS+ + ++S +SS + + S ++ ++S
Sbjct: 116 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNS 165
Score = 31.1 bits (67), Expect = 0.69
Identities = 24/120 (20%), Positives = 55/120 (45%)
Frame = +2
Query: 98 SVQNDTQRPKSHRARGASNNSYKSKSALPDHAGENCVQKNKTRPNSSNEICSLNVSDDHE 277
S + + S + +S++S S S+ + + + + +SSN S + S
Sbjct: 117 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNSSSSSSSSSSSS 176
Query: 278 SSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVASSVTLNGESETNCKQNDS 457
SS+S +++ S+++ ++SSS+ + ++S +SS + N S ++ + S
Sbjct: 177 SSSSSSSSSSSSSSSSSSSSSSSSSSSS------SSSSSSSSSSSSSNSSSSSSSSSSSS 230
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/98 (20%), Positives = 42/98 (42%)
Frame = +2
Query: 62 SCEMPNTRRRRFSVQNDTQRPKSHRARGASNNSYKSKSALPDHAGENCVQKNKTRPNSSN 241
S N+ S + + S + +S++S S S+ + + + + +SSN
Sbjct: 159 SSSSSNSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSN 218
Query: 242 EICSLNVSDDHESSASLATTKQRSTATLDKDVAASSSN 355
S + S SS+S + S+++ ++SSS+
Sbjct: 219 SSSSSSSSSSSSSSSSSNNSSSSSSSSSSSSSSSSSSS 256
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/86 (19%), Positives = 40/86 (46%)
Frame = +2
Query: 98 SVQNDTQRPKSHRARGASNNSYKSKSALPDHAGENCVQKNKTRPNSSNEICSLNVSDDHE 277
S + + S + +S++S S S+ + + + + NSS+ S + S
Sbjct: 174 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNSSSSSSSSSSSSSSS 233
Query: 278 SSASLATTKQRSTATLDKDVAASSSN 355
SS + +++ S+++ ++SSS+
Sbjct: 234 SSNNSSSSSSSSSSSSSSSSSSSSSS 259
>SB_39159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 33.1 bits (72), Expect = 0.17
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Frame = +2
Query: 59 ISCEMPNT--RRRRFSVQNDTQRPKSHRARGASNNSYKSKSALPDHAGENCVQKNKTRPN 232
+SC + N R + +Q++ Q+ K+H S + + VQK K +
Sbjct: 358 VSCSIINIDDRGTQKKLQDEVQKGKAHVDCDVSCSMVNIDDQGSQKILHDEVQKGKAHVD 417
Query: 233 SSNEICSLNVSDDHESSASLATTKQRSTATLDKDVAASSSNID 361
+N+ DD + L Q+ TA +D DV+ S NID
Sbjct: 418 CDVSCSIINI-DDRGTQKILQDEVQKGTAHIDGDVSCSMINID 459
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +2
Query: 266 DDHESSASLATTKQRSTATLDKDVAASSSNID 361
DD S L QR TA +D DV+ S NID
Sbjct: 335 DDQGSQKILQDEVQRGTAHIDGDVSCSIINID 366
>SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 31.5 bits (68), Expect = 0.52
Identities = 23/107 (21%), Positives = 49/107 (45%)
Frame = +2
Query: 98 SVQNDTQRPKSHRARGASNNSYKSKSALPDHAGENCVQKNKTRPNSSNEICSLNVSDDHE 277
S + + S +S+NS + ++ + + N +SSN + N S +
Sbjct: 137 SSSSSSSSSSSSSGSSSSSNSNSNSNSNSSSSSNSSSNSNSNSSSSSNSSSNSNSSSNSS 196
Query: 278 SSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVASSVTL 418
SS++ ++ RS+++ + SSS+ R+ ++SVA +V +
Sbjct: 197 SSSNSSSNSSRSSSSSSNSNSNSSSSSS-----RSSSSSSVAVAVAV 238
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/99 (19%), Positives = 46/99 (46%)
Frame = +2
Query: 59 ISCEMPNTRRRRFSVQNDTQRPKSHRARGASNNSYKSKSALPDHAGENCVQKNKTRPNSS 238
++C ++ S + + + + +S++S S S+ ++ N + + NSS
Sbjct: 113 VTCTSSSSSNSSRSSSSSSNSNSNSSSSSSSSSSSSSGSSSSSNSNSNSNSNSSSSSNSS 172
Query: 239 NEICSLNVSDDHESSASLATTKQRSTATLDKDVAASSSN 355
+ S + S + SS S +++ S++ + + SSS+
Sbjct: 173 SNSNSNSSSSSNSSSNSNSSSNSSSSSNSSSNSSRSSSS 211
Score = 29.5 bits (63), Expect = 2.1
Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Frame = +2
Query: 62 SCEMPNTRRRRFSVQNDTQRPKSHRARGASNNSYKSKSALPD-HAGENCVQKNKTRPNSS 238
S N+ R S N S + +S++S S S+ + ++ N + + NS+
Sbjct: 117 SSSSSNSSRSSSSSSNSNSNSSSSSSSSSSSSSGSSSSSNSNSNSNSNSSSSSNSSSNSN 176
Query: 239 NEICSLNVSDDHESSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVASSVTL 418
+ S + S + +S+S +++ S++ + ++SSSN + + + +S +SSV +
Sbjct: 177 SNSSSSSNSSSNSNSSSNSSSSSNSSSNSSRS-SSSSSNSNS-NSSSSSSRSSSSSSVAV 234
Score = 27.5 bits (58), Expect = 8.5
Identities = 26/120 (21%), Positives = 51/120 (42%)
Frame = +2
Query: 98 SVQNDTQRPKSHRARGASNNSYKSKSALPDHAGENCVQKNKTRPNSSNEICSLNVSDDHE 277
S +++ R S + SN+S S S+ +G + +SSN + N +
Sbjct: 118 SSSSNSSRSSSSSSNSNSNSSSSSSSSSSSSSGSS---------SSSNSNSNSNSNSSSS 168
Query: 278 SSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVASSVTLNGESETNCKQNDS 457
S++S + S+++ + SSSN + + S +SS N S ++ ++ S
Sbjct: 169 SNSSSNSNSNSSSSSNSSSNSNSSSNSSSSSNSSSNSSRSSSSSSNSNSNSSSSSSRSSS 228
>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 31.1 bits (67), Expect = 0.69
Identities = 25/106 (23%), Positives = 46/106 (43%)
Frame = +2
Query: 149 SNNSYKSKSALPDHAGENCVQKNKTRPNSSNEICSLNVSDDHESSASLATTKQRSTATLD 328
SN++ S S ++ N N + NS++ S + S+ + +S T +TAT
Sbjct: 492 SNSNSNSNSNSNSNSNSNSDSNNNSNSNSNSNSNSNSNSNSNSNSTVTVTVTATATATAT 551
Query: 329 KDVAASSSNIDLYHYLRAPENASVASSVTLNGESETNCKQNDSLVS 466
V SSS+ + N++ S+ N S +N N ++ +
Sbjct: 552 VTVHNSSSSSS-----NSNSNSNSNSNSNSNSNSNSNSNSNRTVTA 592
>SB_14763| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 689
Score = 31.1 bits (67), Expect = 0.69
Identities = 20/76 (26%), Positives = 37/76 (48%)
Frame = +2
Query: 98 SVQNDTQRPKSHRARGASNNSYKSKSALPDHAGENCVQKNKTRPNSSNEICSLNVSDDHE 277
S+ N S+ + SN++ S S +++ N + + NS++ S N S+ +
Sbjct: 558 SISNSNSNSNSN-SNSNSNSNNNSNSNSNNNSNNNNNNNSNSNSNSNSNSNSNNNSNSNS 616
Query: 278 SSASLATTKQRSTATL 325
+S ATT +TAT+
Sbjct: 617 NSTVTATTTTTATATV 632
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 30.7 bits (66), Expect = 0.91
Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 8/128 (6%)
Frame = +2
Query: 74 PNTRRRRFSVQNDTQR-PKSHRARGASN-------NSYKSKSALPDHAGENCVQKNKTRP 229
PN+R R S + QR P +R R S+ +SY K PD + E + ++
Sbjct: 115 PNSRVDRGSTRYSAQRGPGYNRDRDVSHKRPLPKPDSYNEKVQSPDRSSEGGSDSSHSQS 174
Query: 230 NSSNEICSLNVSDDHESSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVASS 409
+SS+ S + +S +S + ++T+ L ++ S+ + + P S
Sbjct: 175 DSSSSSSSSDGESGSDSDSSTTSKTTKTTSALCVQSLSTRSSDEKFEGSDFPPRHRGGGS 234
Query: 410 VTLNGESE 433
++ E E
Sbjct: 235 ISNYSEDE 242
>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
Length = 2506
Score = 30.7 bits (66), Expect = 0.91
Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 14/167 (8%)
Frame = +2
Query: 101 VQNDTQRPKSHRARGASNNSYKSKSALPDHAGENCVQKNKTRPNSSNEICSLNVSDDHES 280
V +++ + KS + S N + S + ++ + SNE+ + S ++
Sbjct: 1983 VSSESTQLKSKSSMDVSQNKSLNVSTVEVYSMSESAIETVKGDRQSNELIKSSKSVSKDN 2042
Query: 281 SASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASV------------ASSVT--L 418
+ +++ ++ S +L + SN H SV A+ V+ L
Sbjct: 2043 ARVISSVEKTSKTSLKSSINIMVSNKGPKHNSEMSSTTSVEKTKSQSKRSLEATKVSPEL 2102
Query: 419 NGESETNCKQNDSLVSQHRIKVRSPKRCAPTIDDTEQAEGRSLDAEE 559
+ E+ + KQN S VS R K SPK + I +T Q++ R+ + E
Sbjct: 2103 SFETTKDSKQNLSKVSLSRGKAESPKPSSSDIVNTFQSDERASFSSE 2149
>SB_12715| Best HMM Match : Adeno_E1A (HMM E-Value=1.3)
Length = 909
Score = 30.7 bits (66), Expect = 0.91
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +2
Query: 308 RSTATLDKDVAASSSNIDLYHYLRAPENASVASSVTLNGESETNCKQND 454
+ T T DK + SN+ L R +N SV SSVTL +S C + D
Sbjct: 197 KKTRTDDK---SGPSNVTLLSQSRHEDNESVPSSVTLLNQSRNECGEID 242
>SB_24814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 101 VQNDTQRPKSHRARGASNNSYKSKSALPDHAGENCVQKNKTRPNSSNE 244
V + +R SHR R S ++ S L D+ +++NK SS E
Sbjct: 635 VNSSVKRRPSHRKRQGSEKVHRVGSVLSDYTKPKVIRRNKEGVTSSEE 682
>SB_57604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 631
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -2
Query: 242 HWNC*DVSCSFVHNFLRHGRGARTS-ICSCYWRRPSLGETSVVV 114
+WN V CSFVH+ + HG G T+ C WR+ ++ + +V+
Sbjct: 566 NWND-QVVCSFVHDLVCHGAGRDTAQRRRCPWRQCAVKQHHLVL 608
>SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1780
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/98 (18%), Positives = 41/98 (41%)
Frame = +2
Query: 155 NSYKSKSALPDHAGENCVQKNKTRPNSSNEICSLNVSDDHESSASLATTKQRSTATLDKD 334
+++ S A EN + RP++ + + H S S + T+++ +
Sbjct: 381 DNFTSIQAFNKMQAENQARLQTQRPSAGTTVSTSEQQQPHHSKESTQNAAKSYTSSMHTN 440
Query: 335 VAASSSNIDLYHYLRAPENASVASSVTLNGESETNCKQ 448
S ++ + +P + S +SS T + E++ K+
Sbjct: 441 AVLSPTSSEELRSTASPSHQSGSSSPTPTSQDESSDKK 478
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 29.5 bits (63), Expect = 2.1
Identities = 23/78 (29%), Positives = 39/78 (50%)
Frame = +2
Query: 227 PNSSNEICSLNVSDDHESSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVAS 406
P+ S I N + + + T S++T++ V +++S+I+ + ASVAS
Sbjct: 64 PSISTSILPYNTTVIATPNTTRLVTSTISSSTVNVSVISTTSSIE------STIMASVAS 117
Query: 407 SVTLNGESETNCKQNDSL 460
S+ LN S T ND+L
Sbjct: 118 SIQLNITSNTTMAVNDTL 135
Score = 28.7 bits (61), Expect = 3.7
Identities = 22/78 (28%), Positives = 39/78 (50%)
Frame = +2
Query: 227 PNSSNEICSLNVSDDHESSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVAS 406
P+ S I N + + + T S++T++ +++S+I+ + ASVAS
Sbjct: 265 PSISTSILPYNTTVIATPNTTRLVTSTISSSTVNVSAISTTSSIE------STIMASVAS 318
Query: 407 SVTLNGESETNCKQNDSL 460
S+ LN S T + ND+L
Sbjct: 319 SIQLNITSNTTVEVNDTL 336
Score = 27.9 bits (59), Expect = 6.4
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = +2
Query: 227 PNSSNEICSLNVSDDHESSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVAS 406
P+ S I N + + + T S++T++ +++S+I+ + ASVAS
Sbjct: 466 PSISTSILPYNTTVIATPNTTRLVTSTISSSTVNVSAISTTSSIE------STIMASVAS 519
Query: 407 SVTLNGESETNCKQNDSL 460
S+ LN S T ND+L
Sbjct: 520 SIQLNITSNTTMAVNDTL 537
>SB_14102| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0024)
Length = 515
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 535 LCLFCVVNSWCASLGTPHFDTMLTY*AIILFTVR 434
L +F + SW +L PH+ + Y A + TVR
Sbjct: 42 LAMFFIAGSWMGNLNAPHYYNIRGYSAYLRVTVR 75
>SB_9624| Best HMM Match : PAPA-1 (HMM E-Value=1.2)
Length = 278
Score = 29.1 bits (62), Expect = 2.8
Identities = 25/104 (24%), Positives = 44/104 (42%)
Frame = +2
Query: 236 SNEICSLNVSDDHESSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVASSVT 415
+ E+ + S D E + TTK + + K A S LRA N SV+S
Sbjct: 54 AEEVSDSDESIDEEQVTQIPTTKCSCSNEIGKIWEAIES-------LRAASNGSVSSQSQ 106
Query: 416 LNGESETNCKQNDSLVSQHRIKVRSPKRCAPTIDDTEQAEGRSL 547
N ++ D+ ++ R+ +RS + I + +Q R++
Sbjct: 107 TNAREMQMIRERDAEINSLRLHIRSLELEVKRITEEKQGLVRAI 150
>SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)
Length = 521
Score = 29.1 bits (62), Expect = 2.8
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Frame = +2
Query: 149 SNNSYKSKSALPDHAGENCVQKNKTRPNSSNEICSLNVSDDHESSASLATTKQRSTATLD 328
S+NSY S + +N N N+ N + N + D+ +S + T S +
Sbjct: 230 SDNSYTDNSTSDNSKKDN---SNPNNSNTDNSSSADNSNPDNSNSDNSNTDNSNSDNSSS 286
Query: 329 KDVAASSSNIDLYHYLRA-PENASVASSVTLNGESETNCKQNDS 457
+ + +SN D + PEN S + + N ++ N +DS
Sbjct: 287 DNSNSDNSNTDNSTSNNSNPEN-STSDNSNSNNSNQDNSNSDDS 329
>SB_23760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 28.7 bits (61), Expect = 3.7
Identities = 24/119 (20%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Frame = +2
Query: 128 SHRARGASNNSYKSKSALPDHAGENCVQKNKTRPNSSNEICSLNVSDDHESSASLATTKQ 307
S A A +S + S + A + + + S++ S N++ +S++ A++ +
Sbjct: 23 SANASSAKTSSASASSNIASSASASSASMSSSSSLSAS--ASSNIASSDIASSANASSAK 80
Query: 308 RSTATLDKDVA----ASSSNIDLYHYLRAPENASVASSVTLNGESETNCKQNDSLVSQH 472
S+A+ ++A ASS+++ L A ++++ASS + + ++ K + + S +
Sbjct: 81 TSSASASSNIASSASASSASMSSASSLSASASSNIASSDIASSANASSAKTSSASASSN 139
>SB_15137| Best HMM Match : SRCR (HMM E-Value=4.9e-28)
Length = 327
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/97 (18%), Positives = 41/97 (42%)
Frame = +2
Query: 65 CEMPNTRRRRFSVQNDTQRPKSHRARGASNNSYKSKSALPDHAGENCVQKNKTRPNSSNE 244
CE+ + N+ S+ + +NNS + + + + N + NS+N
Sbjct: 112 CEIGMQSNNNNNSNNNNSTSNSNSSTRNNNNSTSNSNNSTRNNNNSTSNSNNSTSNSNNS 171
Query: 245 ICSLNVSDDHESSASLATTKQRSTATLDKDVAASSSN 355
+ N S ++ +S S + ++ ++ +SS+N
Sbjct: 172 TSNSNNSSNNNNSTSNSNNSTSNSNNSTRNNNSSSNN 208
>SB_13424| Best HMM Match : Pox_A32 (HMM E-Value=0.073)
Length = 1387
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/79 (26%), Positives = 32/79 (40%)
Frame = +3
Query: 33 LINKKNKYKFRVKCRTRGDADSPCKMIHNDRSLTERGAPPITATNRSPRSPTMPEKIVYK 212
L+N ++ +K RG +SP H RS + P A P S + +V
Sbjct: 1081 LVNTRDGVHLEIKRTARGSGNSPYNTEHIRRSGMDPENVPFNALIVGPTSCGKTQFVV-D 1139
Query: 213 RTRHVLTVPMRFVL*MCPT 269
R R +++ MCPT
Sbjct: 1140 RLRGPFRGKFDYIVLMCPT 1158
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 28.7 bits (61), Expect = 3.7
Identities = 25/89 (28%), Positives = 42/89 (47%)
Frame = +2
Query: 89 RRFSVQNDTQRPKSHRARGASNNSYKSKSALPDHAGENCVQKNKTRPNSSNEICSLNVSD 268
RR S D+ +S +S S+ A+ +G+ K K R + ++ SD
Sbjct: 775 RRSSHMEDSSANRSISPVKERASSKPSEKAMEAPSGKAPDTKQKERKKTDSD------SD 828
Query: 269 DHESSASLATTKQRSTATLDKDVAASSSN 355
D ESS S ++ + S+ T D D ++ SS+
Sbjct: 829 DDESSESDSSDDEDSSDTSDSDDSSDSSS 857
>SB_50721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1057
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +2
Query: 266 DDHESSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVASSVTLNGESETNCK 445
D E+ A + K +TLD A + H L AP+ +V+ + N ++++ K
Sbjct: 14 DLKEACACICDEKFNIVSTLD-GAAGKTITSKGTHILPAPQRLTVSKNTAKNISAQSSSK 72
Query: 446 QNDSL 460
Q DSL
Sbjct: 73 QFDSL 77
>SB_50209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 28.3 bits (60), Expect = 4.8
Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 3/126 (2%)
Frame = +2
Query: 77 NTRRRRFSVQNDTQRPKSHRARGASNNSYKSKSALP---DHAGENCVQKNKTRPNSSNEI 247
N S ND ++ ++NN + + + D+ N +KNK+ N +N+
Sbjct: 290 NENNNNNSNNNDNNSNSNNNDNNSNNNDFNNSNRNDHNVDNNSHNNDEKNKSNSNDNNDE 349
Query: 248 CSLNVSDDHESSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVASSVTLNGE 427
+ N S++ +S+ +S + + +S+N + +R NA S+ N +
Sbjct: 350 NNNNNSNNKDSNNKSNNNDNKSNS---NNTENNSNNDGFDNSIRNDNNAGNKSN---NKD 403
Query: 428 SETNCK 445
+ N K
Sbjct: 404 EKNNSK 409
Score = 27.9 bits (59), Expect = 6.4
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
Frame = +2
Query: 146 ASNNSYKSKSALPDHAGE---NCVQKNKTRPNSSNEICSLNVSDDHESSASLATTKQRST 316
++NN +KS DH E N N NS+N + N +D + S+ + S
Sbjct: 274 SNNNHGNNKSNSNDHNNENNNNNSNNNDNNSNSNNNDNNSNNNDFNNSNRNDHNVDNNSH 333
Query: 317 ATLDKDVAASSSNIDLYHYLRAPENASVASSVTLNGESETNCKQNDS 457
+K+ + S+ N D + + S S + +S +N +N+S
Sbjct: 334 NNDEKNKSNSNDNNDENNNNNSNNKDSNNKSNNNDNKSNSNNTENNS 380
>SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37)
Length = 599
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/84 (22%), Positives = 42/84 (50%)
Frame = +2
Query: 221 TRPNSSNEICSLNVSDDHESSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASV 400
++ SN C +N S S++SL + + A+ +ASS+++ L A ++++
Sbjct: 315 SKAGPSNCSCDMNASPSALSASSLPASASSAIAS---SASASSASMSSASSLSASASSNI 371
Query: 401 ASSVTLNGESETNCKQNDSLVSQH 472
ASS + + ++ K + + S +
Sbjct: 372 ASSDIASSANASSAKTSSASASSN 395
>SB_10387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 597
Score = 28.3 bits (60), Expect = 4.8
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +2
Query: 338 AASSSNIDLYH-YLRAPENASVASSVTLNGESETNCKQN-DSLVSQHRIKVRSPKRCAPT 511
A +SN++ Y Y P N+ + TLN + TN QN S HR+ S K
Sbjct: 370 AMFTSNVNNYRSYSVKPSNSMRSQHETLNKSAATNANQNCQRFNSSHRMSDGSNK----I 425
Query: 512 IDDTEQAEGRSLDAE 556
T+ GRS+ +
Sbjct: 426 EQKTKNKRGRSISVD 440
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 28.3 bits (60), Expect = 4.8
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = +2
Query: 227 PNSSNEICSLNVSDDHESSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVAS 406
P+ S I N + + + T S++T++ +++S+I+ + ASVAS
Sbjct: 958 PSISTSILPYNTTVIATPNTTRLVTSMISSSTVNVSAISTTSSIE------STIMASVAS 1011
Query: 407 SVTLNGESETNCKQNDSL 460
S+ LN S T ND+L
Sbjct: 1012 SIQLNITSNTTMAVNDTL 1029
Score = 27.9 bits (59), Expect = 6.4
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = +2
Query: 227 PNSSNEICSLNVSDDHESSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVAS 406
P+ S I N + + + T S++T++ +++S+I+ + ASVAS
Sbjct: 154 PSISTSILPYNTTVIATPNTTRLVTSTISSSTVNVSAISTTSSIE------STIMASVAS 207
Query: 407 SVTLNGESETNCKQNDSL 460
S+ LN S T ND+L
Sbjct: 208 SIQLNITSNTTMAVNDTL 225
Score = 27.9 bits (59), Expect = 6.4
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = +2
Query: 227 PNSSNEICSLNVSDDHESSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVAS 406
P+ S I N + + + T S++T++ +++S+I+ + ASVAS
Sbjct: 757 PSISTSILPYNTTVIATPNTTRLATSTISSSTVNVSAISTTSSIE------STIMASVAS 810
Query: 407 SVTLNGESETNCKQNDSL 460
S+ LN S T ND+L
Sbjct: 811 SIQLNITSNTTMAVNDTL 828
Score = 27.9 bits (59), Expect = 6.4
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = +2
Query: 227 PNSSNEICSLNVSDDHESSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVAS 406
P+ S I N + + + T S++T++ +++S+I+ + ASVAS
Sbjct: 1360 PSISTSILPYNTTVIATPNTTRLVTSTISSSTVNVSAISTTSSIE------STIMASVAS 1413
Query: 407 SVTLNGESETNCKQNDSL 460
S+ LN S T ND+L
Sbjct: 1414 SIQLNITSNTTMAVNDTL 1431
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +2
Query: 299 TKQRSTATLDKDVAASSSNIDLYHYLRAPEN---ASVASSVTLNGESETNCKQNDSL 460
T +T + +++S+ N+ + E+ ASVASS+ LN S T ND+L
Sbjct: 1576 TTPNTTRLVTSTISSSTVNVSAISTTSSIESTIMASVASSIQLNITSNTTMAVNDTL 1632
>SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 104 QNDTQRPKSHRARGASNNSYKSKSALPDHAGENCVQKNKTRPNSSNE 244
+N +Q + H RG+ +S + LP GE+ +K+ P + E
Sbjct: 138 RNRSQYQRLHSYRGSRTSSRHRELCLPSKGGESRPDHDKSHPTNGGE 184
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 28.3 bits (60), Expect = 4.8
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = +2
Query: 227 PNSSNEICSLNVSDDHESSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVAS 406
P+ S I N + + + T S++T++ +++S+I+ + ASVAS
Sbjct: 137 PSISTSILPYNTTVIATPNTTRMVTSSISSSTVNVSAISTTSSIE------STIMASVAS 190
Query: 407 SVTLNGESETNCKQNDSL 460
S+ LN S T ND+L
Sbjct: 191 SIQLNITSNTTMAVNDTL 208
>SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +3
Query: 45 KNKYKFRVKCRTRGDADSPCKMIHNDRSLTERGAPPITATNRSPRSPTMPEKI 203
K K K + K ++ ADSP + + +S G PP T P E +
Sbjct: 570 KRKKKKKCKSKSPTKADSPQRPLRRSKSSKRIGRPPKTNKKSQPLDSDSEENV 622
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 27.9 bits (59), Expect = 6.4
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = +2
Query: 227 PNSSNEICSLNVSDDHESSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVAS 406
P+ S I N + + + T S++T++ +++S+I+ + ASVAS
Sbjct: 154 PSISTSILPYNTTVIATPNTTRLVTSTISSSTVNVSAISTTSSIE------STIMASVAS 207
Query: 407 SVTLNGESETNCKQNDSL 460
S+ LN S T ND+L
Sbjct: 208 SIQLNITSNTTMAVNDTL 225
Score = 27.9 bits (59), Expect = 6.4
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = +2
Query: 227 PNSSNEICSLNVSDDHESSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVAS 406
P+ S I N + + + T S++T++ +++S+I+ + ASVAS
Sbjct: 355 PSISTSILPYNTTVIATPNTTRLVTSTISSSTVNVSAISTTSSIE------STIMASVAS 408
Query: 407 SVTLNGESETNCKQNDSL 460
S+ LN S T ND+L
Sbjct: 409 SIQLNITSNTTMAVNDTL 426
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 27.9 bits (59), Expect = 6.4
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +2
Query: 263 SDDHESSASLATTKQRSTATLDKDVAASSSNIDLY----HYLRAPENASVASSVTLNGES 430
S++ E S L +Q+ L+++ A+ S++++ Y ++ R + ++ T N E
Sbjct: 4162 SENSEISGRLQAVRQK-IVELERNNASLSASLEKYQSDFNHTRQERDKYQTANYTYNREK 4220
Query: 431 ETNCKQNDSLVSQHRIKVRSPKRCAPTIDD 520
E +QN L + +KV + T D
Sbjct: 4221 EELAQQNAELKMKLEVKVNECEELERTTSD 4250
>SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1002
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -2
Query: 239 WNC*DVSCSFVHNFLRHGRGARTSICS 159
W C + SC F LRHG +C+
Sbjct: 792 WKCKEKSCRFGGRILRHGFSLSDQLCT 818
>SB_46611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 354
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 206 VQKNKTRPNSSNEICSLNVSDDHESSASLATTKQRSTATLDKDVAASSS 352
+Q R + ++CS+ ++ + S + +QR T TLD AS+S
Sbjct: 84 LQSGGIRVINHEDLCSVITEEESKISVLESEVEQRKTPTLDTSSEASTS 132
>SB_34373| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 538
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +2
Query: 98 SVQNDTQRPKSHRARGASNNSYKSKSA 178
S++ND Q+ +SH++ G S++S + K A
Sbjct: 368 SLKNDIQKRRSHQSEGDSHSSPRLKGA 394
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 27.5 bits (58), Expect = 8.5
Identities = 27/105 (25%), Positives = 46/105 (43%)
Frame = +2
Query: 59 ISCEMPNTRRRRFSVQNDTQRPKSHRARGASNNSYKSKSALPDHAGENCVQKNKTRPNSS 238
I CEM ++ +++ + + K + N Y S + P + + +N+ P SS
Sbjct: 459 IECEMDRLAEQQRNIERELRDLKQEK-NSPQMNGYSSVNE-PLYWS---IDQNE--PTSS 511
Query: 239 NEICSLNVSDDHESSASLATTKQRSTATLDKDVAASSSNIDLYHY 373
N L S +HE+S SLA++ + L + S D HY
Sbjct: 512 NHTSPL--SRNHETSQSLASSSDGTHIRLTRAATTEYSITDGRHY 554
>SB_31502| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 282
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Frame = +2
Query: 179 LPDHAGENCVQKNKTRPNSSNEICSLN-------VSDDHESSAS 289
LPD +N +++ + RP S ++C VSD H SAS
Sbjct: 36 LPDIESDNLIKRYQRRPKKSEKLCLAEFAAWFNCVSDKHADSAS 79
>SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)
Length = 450
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 149 SNNSYKSKSALPDHAGENCVQKNKTRPNSSNEI--CSLNVSDDHESSASLATTKQRST 316
SNN+ S S+ + NC N N+ N C+ N + ++ ++A+ ATT +T
Sbjct: 29 SNNNNNSSSSSSNCNNSNCNNSNCNNINNCNNSNNCNNNNNCNNTTAATTATTTTAAT 86
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,544,347
Number of Sequences: 59808
Number of extensions: 396779
Number of successful extensions: 1517
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1498
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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