Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f21
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          25   0.54 
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          25   0.54 
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          25   0.54 
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          25   0.54 
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          25   0.54 
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          25   0.54 
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          25   0.54 
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    25   0.54 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   1.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.2  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    22   3.8  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   6.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   8.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.9  

>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 44  KKQI*ISCEMPNTRRRRFSVQNDTQRPKSHRARGASNNS 160
           KK++ +  E+   R ++ S ++ ++ P+S     ASN S
Sbjct: 56  KKKMILEYELRRAREKKLSKRSKSRSPESRGRSNASNTS 94


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 44  KKQI*ISCEMPNTRRRRFSVQNDTQRPKSHRARGASNNS 160
           KK++ +  E+   R ++ S ++ ++ P+S     ASN S
Sbjct: 56  KKKMILEYELRRAREKKLSKRSKSRSPESRGRSNASNTS 94


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 44  KKQI*ISCEMPNTRRRRFSVQNDTQRPKSHRARGASNNS 160
           KK++ +  E+   R ++ S ++ ++ P+S     ASN S
Sbjct: 56  KKKMILEYELRRAREKKLSKRSKSRSPESRGRSNASNTS 94


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 44  KKQI*ISCEMPNTRRRRFSVQNDTQRPKSHRARGASNNS 160
           KK++ +  E+   R ++ S ++ ++ P+S     ASN S
Sbjct: 56  KKKMILEYELRRAREKKLSKRSKSRSPESRGRSNASNTS 94


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 44  KKQI*ISCEMPNTRRRRFSVQNDTQRPKSHRARGASNNS 160
           KK++ +  E+   R ++ S ++ ++ P+S     ASN S
Sbjct: 56  KKKMILEYELRRAREKKLSKRSKSRSPESRGRSNASNTS 94


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 44  KKQI*ISCEMPNTRRRRFSVQNDTQRPKSHRARGASNNS 160
           KK++ +  E+   R ++ S ++ ++ P+S     ASN S
Sbjct: 56  KKKMILEYELRRAREKKLSKRSKSRSPESRGRSNASNTS 94


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 44  KKQI*ISCEMPNTRRRRFSVQNDTQRPKSHRARGASNNS 160
           KK++ +  E+   R ++ S ++ ++ P+S     ASN S
Sbjct: 56  KKKMILEYELRRAREKKLSKRSKSRSPESRGRSNASNTS 94


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 44  KKQI*ISCEMPNTRRRRFSVQNDTQRPKSHRARGASNNS 160
           KK++ +  E+   R ++ S ++ ++ P+S     ASN S
Sbjct: 56  KKKMILEYELRRAREKKLSKRSKSRSPESRGRSNASNTS 94


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 470 HRIKVRSPKRCAPTIDDTEQAEGRSLDA 553
           HR+ + +PK+  PT   ++++   +LDA
Sbjct: 449 HRLGIDTPKKDGPTKSWSDESLNNALDA 476



 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = +3

Query: 138 RGAPPITATNRSPRSPTMPEKIVYKRTRH 224
           R  PP  + +  PR P  P     K  RH
Sbjct: 127 RDGPPSVSLSSPPREPGTPRINFTKLKRH 155


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 486  GVPRDAHQLLTTQNKQRAGRSMQR 557
            G+PRD   +   +N+Q+   S Q+
Sbjct: 1295 GIPRDQRAMTEARNQQQQASSQQQ 1318



 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 184 GERGLRFVAVIGGAPRS 134
           G+ G R  AVI G PRS
Sbjct: 606 GKLGTRRAAVIYGIPRS 622


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 416 ELLSWPQRRFPEPLGND 366
           ELL++P+R F E + ND
Sbjct: 80  ELLNFPKRSFSENMIND 96


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 274 VVVGHIQRTNLIGTVRTCLVL 212
           V+   I  T L+G V TC+V+
Sbjct: 58  VIYAVIFVTGLVGNVSTCVVI 78


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 117 CVSFCTENRRRLV 79
           CV  C+E+  RLV
Sbjct: 19  CVGLCSEDEERLV 31


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 13/63 (20%), Positives = 25/63 (39%)
 Frame = +2

Query: 230 NSSNEICSLNVSDDHESSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVASS 409
           +  NE+ +  +   HE    +    Q     +  DV  S++++ LY    +  N     S
Sbjct: 335 HKENELYANLMKIVHEKQQEITGLIQNIIQEMKNDVLLSNNDVYLYQNTMSNNNQRTEWS 394

Query: 410 VTL 418
            T+
Sbjct: 395 ATV 397


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 13/63 (20%), Positives = 25/63 (39%)
 Frame = +2

Query: 230 NSSNEICSLNVSDDHESSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVASS 409
           +  NE+ +  +   HE    +    Q     +  DV  S++++ LY    +  N     S
Sbjct: 373 HKENELYANLMKIVHEKQQEITGLIQNIIQEMKNDVLLSNNDVYLYQNTMSNNNQRTEWS 432

Query: 410 VTL 418
            T+
Sbjct: 433 ATV 435


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 138 RGAPPITATNRSPRSPTMPEKIVYKRTRHVLTV 236
           RG+    + N SPRSP    +   KR +  ++V
Sbjct: 311 RGSVHNGSNNGSPRSPESNSRCSVKREKIKISV 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,329
Number of Sequences: 438
Number of extensions: 3924
Number of successful extensions: 18
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)