Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f20
         (559 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70038-3|CAA93883.2|  541|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z83116-10|CAB05564.2|  311|Caenorhabditis elegans Hypothetical p...    27   9.1  
Z81521-5|CAE17802.1|  657|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z81132-13|CAB03427.2|  308|Caenorhabditis elegans Hypothetical p...    27   9.1  
AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z70038-3|CAA93883.2|  541|Caenorhabditis elegans Hypothetical
           protein ZK1067.4 protein.
          Length = 541

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 141 LSSPTEPNPFKFNRPTGYGPRIYKVIFIIVC 233
           ++ P  PN F+  R TGYG  +   + +I+C
Sbjct: 11  VAKPRRPNIFRVLRRTGYGKCLVCSLLLILC 41


>Z83116-10|CAB05564.2|  311|Caenorhabditis elegans Hypothetical
           protein M01B2.9 protein.
          Length = 311

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 55  IKIKIV*WCKSVRAICNIII 114
           I + +  +CK++R+ICNI+I
Sbjct: 25  IMVMVTFYCKNLRSICNILI 44


>Z81521-5|CAE17802.1|  657|Caenorhabditis elegans Hypothetical
           protein F32A11.7 protein.
          Length = 657

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 227 SLLIKKSRHHHGNQTVCKN--FKKIIIRA*DKVMEGRTLT*VTNKNNRED 370
           S L+K     H N+ V +   F + + R  DK++   T+T +T K  RED
Sbjct: 56  SCLLKLEDDAHRNRLVHRRKLFSRKMRRRIDKMVTNTTMTPITEKEIRED 105


>Z81132-13|CAB03427.2|  308|Caenorhabditis elegans Hypothetical
           protein T26E4.14 protein.
          Length = 308

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 55  IKIKIV*WCKSVRAICNIII 114
           I + +  +CK++R+ICNI+I
Sbjct: 25  IMVMVTFYCKNLRSICNILI 44


>AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical
           protein C26G2.1 protein.
          Length = 1270

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 218 IYYSLLIKKSRHHHGNQTVCKNFKK 292
           +Y SL+++  R+ HG    C+ F+K
Sbjct: 190 VYTSLVVQSDRNDHGKVITCEAFQK 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,901,453
Number of Sequences: 27780
Number of extensions: 176796
Number of successful extensions: 508
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)