Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f19
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51799| Best HMM Match : SET (HMM E-Value=0)                         32   0.35 
SB_10922| Best HMM Match : UPF0203 (HMM E-Value=9.4)                   29   2.5  
SB_49795| Best HMM Match : Astacin (HMM E-Value=6.6e-36)               28   5.7  
SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)           28   7.5  
SB_50943| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_51799| Best HMM Match : SET (HMM E-Value=0)
          Length = 503

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -3

Query: 629 NKYLLIPILQTGTHALEKCIGYSYSIYLVIRGQPVVFYFSRRFHEPLLVIL 477
           NKY+ +P L+T TH  ++  G  Y ++L  +   V +Y + +    LLV L
Sbjct: 161 NKYITVPCLKT-THEFKRAFGKKYRLFLKPKKARVSYYSNYKRKMELLVKL 210


>SB_10922| Best HMM Match : UPF0203 (HMM E-Value=9.4)
          Length = 400

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = -3

Query: 632 VNKYLLIPILQTGTHALEKCIGYSYSIYLVIRGQPVVFYFSRRFHEPLLVILFVLSNY*G 453
           +N Y++I ++    +  +KCI     I L++R     + + +  ++ +++ L    NY G
Sbjct: 321 INHYIIITLMPRDNYGYKKCINQYIIITLMLRDN---YGYKKCINQYIIITLMPRDNYGG 377

Query: 452 K 450
           K
Sbjct: 378 K 378


>SB_49795| Best HMM Match : Astacin (HMM E-Value=6.6e-36)
          Length = 267

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 489 QRFVKSSREIENDRLTSDNQVNRVAISNALFQSMRSGLKNGNQQILIYF 635
           +RFV  SREI  D +T  + + R   ++    S+R+G+K    +  I F
Sbjct: 42  RRFVYQSREINKDMITIASSLRR---NSRAMASIRAGMKQWTDKTCITF 87


>SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)
          Length = 1643

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 614 IPILQTGTHALEKCIGYSYSIYLVIRGQPVVFYFSRRFHEPLLV 483
           IP      H LE  +  + SI  V RGQ  V +  RR+++P+ +
Sbjct: 80  IPFYSPPEHVLE-ALERTISIGTVFRGQTEVGWLGRRYNKPIKI 122


>SB_50943| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 595 ERMLWKSALDIATLF-TWLSEVSRSFSISLEDFT 497
           E ++  + +DIA +  TWLSE+     +SL+D+T
Sbjct: 96  ECVMQNNGIDIACITETWLSEMIPDSHVSLQDYT 129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,398,189
Number of Sequences: 59808
Number of extensions: 351539
Number of successful extensions: 697
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)