Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f18
         (233 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p...    40   4e-05
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   0.58 
SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    24   3.1  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    23   4.1  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    23   7.1  
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    23   7.1  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    22   9.4  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    22   9.4  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    22   9.4  

>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 216

 Score = 39.9 bits (89), Expect = 4e-05
 Identities = 19/36 (52%), Positives = 29/36 (80%)
 Frame = +1

Query: 124 NLLVRSLSTSVASAQMVKPPVQVFGLEGRYASALFS 231
           +L +RSL+T+ ASA    PPVQ++GL+G YAS+L++
Sbjct: 17  SLGIRSLATATASAH---PPVQLYGLDGSYASSLYT 49


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 226  KERKHTDLPIQILALEVLPFVLRR 155
            KER+   L ++ +  +VLPF+LRR
Sbjct: 1570 KERERGTLALEAIHKQVLPFMLRR 1593


>SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 144

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 229 KKERKHTDLPIQILALEVLPFVLRRHLCSK 140
           KKE  +    IQIL+L VLP    R + +K
Sbjct: 61  KKETHNKSHKIQILSLAVLPAYRNRSIGTK 90


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 205 LPIQILALEVLPFVLRR 155
           +P+    LE++PFVLRR
Sbjct: 378 IPLSSQFLEMIPFVLRR 394


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 188 KYLDWKVGMLPLF 226
           K+  WKVG+LP F
Sbjct: 315 KFGPWKVGLLPKF 327


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
 Frame = +3

Query: 120 GESAGSLFEHKCRLSTNGKTSSASIWIGR---SVCFRSFFS 233
           G    S F H    S +G  +   IWI R   SV F +F +
Sbjct: 246 GNGPNSFFSHVTGDSWHGTDAKVFIWIDRNSKSVLFFAFLA 286


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = -1

Query: 182 GGFTICAEATLVLKERTSRFPFKADIILFKNXXAHVNN 69
           GGF +    ++  +    RFP K   +L  +   H  N
Sbjct: 202 GGFCLFNNVSVTARSMLQRFPDKIKRVLIVDWDIHHGN 239


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 164 HKW*NLQCKYLDW 202
           +KW  LQC  L W
Sbjct: 299 YKWQGLQCSCLQW 311


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = -2

Query: 208 DLPIQILALEVLPFV--LRRH 152
           D P  IL LEV PFV  +RR+
Sbjct: 840 DRPNDILILEVAPFVRCMRRY 860


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 923,750
Number of Sequences: 5004
Number of extensions: 14719
Number of successful extensions: 35
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 57
effective length of database: 2,077,250
effective search space used: 41545000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)