Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f18
         (233 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279...    27   2.8  
06_03_1369 + 29620958-29621030,29622421-29622452,29622538-296225...    26   3.7  
11_03_0009 - 8907870-8907948,8908211-8908317,8908457-8908672,891...    26   4.9  
08_01_0764 - 7332969-7333870,7334044-7334369,7334712-7335384,733...    26   4.9  
10_01_0332 - 3635909-3635912,3635947-3636003,3636004-3636053,363...    25   6.5  

>03_05_0640 -
           26326832-26327166,26327295-26327529,26327665-26327908,
           26328389-26328507,26328860-26329050,26329133-26329220,
           26331653-26331715,26331816-26333944,26334084-26334186
          Length = 1168

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 229 KKERKHTDLPIQILALEVLPFVLRRHLCSKSEPADSPLKP 110
           ++ RK + L   +  L ++ F+    +C    P DSP+ P
Sbjct: 333 RRPRKRSSLRFLVAPLALVVFMAAALICVPPPPVDSPVMP 372


>06_03_1369 +
           29620958-29621030,29622421-29622452,29622538-29622598,
           29622695-29622711,29622916-29623250,29623329-29623686,
           29623784-29624371,29624664-29624939
          Length = 579

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 164 HKW*NLQCKYLDWKVGMLP 220
           HKW N+    L WK+G LP
Sbjct: 483 HKWQNMNENRLLWKLGTLP 501


>11_03_0009 -
           8907870-8907948,8908211-8908317,8908457-8908672,
           8910810-8911490,8911656-8911901
          Length = 442

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 163 LRRHLCSKSEPADSPLKPT*FYLKXYXHTSIIFFKTXGFY 44
           L RH CS     D+PL P    L  +      +F++ G Y
Sbjct: 56  LWRHFCSDDFALDAPLAPGDLPLPSFKDAYKAWFQSFGMY 95


>08_01_0764 -
           7332969-7333870,7334044-7334369,7334712-7335384,
           7336195-7336219
          Length = 641

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -2

Query: 232 LKKERKHTDLPIQILALEVLPFVLRRHLCSKSEPADSPL 116
           L KERK+T++P   +   +L  VLR++   K + A++ +
Sbjct: 59  LGKERKYTNVPKSKMIAYLLKLVLRKNGQPKDDNANASI 97


>10_01_0332 -
           3635909-3635912,3635947-3636003,3636004-3636053,
           3637887-3637945,3638054-3638114,3638938-3640479
          Length = 590

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 120 GESAGSLFEHKCRLSTNGKTSSASIW 197
           G   G +   KC L   G TSS+S+W
Sbjct: 433 GLGDGDMEASKCALHRFGNTSSSSLW 458


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,851,310
Number of Sequences: 37544
Number of extensions: 90750
Number of successful extensions: 205
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 14,793,348
effective HSP length: 56
effective length of database: 12,690,884
effective search space used: 266508564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)