Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f18
         (233 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15670| Best HMM Match : OSCP (HMM E-Value=3.6e-06)                  49   7e-07
SB_49859| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_40689| Best HMM Match : DUF558 (HMM E-Value=1.3e-14)                27   3.1  
SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.5  
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.5  
SB_29189| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.3  
SB_17939| Best HMM Match : zf-C2H2 (HMM E-Value=1e-22)                 25   7.3  
SB_59790| Best HMM Match : VWA (HMM E-Value=0)                         25   9.6  
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.6  

>SB_15670| Best HMM Match : OSCP (HMM E-Value=3.6e-06)
          Length = 154

 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 24/47 (51%), Positives = 34/47 (72%)
 Frame = +1

Query: 91  FLNKIMSALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYASALFS 231
           FL K  S L  N    SLS++ ++A+ VKPP+Q+FG+EGRYA A++S
Sbjct: 9   FLQK--SPLLNNARQLSLSSTRSAAEFVKPPIQIFGIEGRYAHAVYS 53


>SB_49859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = -2

Query: 202 PIQILALEVLPFVLRRHLCSKSE--PADSPLK 113
           PIQI+ L VL FV+RR L +K +  P + P K
Sbjct: 20  PIQIVLLIVLVFVIRRILKAKFDKVPEEPPPK 51


>SB_40689| Best HMM Match : DUF558 (HMM E-Value=1.3e-14)
          Length = 162

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 232 LKKERKHTDLPIQILALEVLPFVLRRHLC 146
           L+  R + DLP+   +++VLP +   HLC
Sbjct: 18  LRIPRIYVDLPLSTQSVQVLPDMAFHHLC 46


>SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 694

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 209 RPSNPNTCTGGFTICAEATLVLKERTSRFPFKADI 105
           RP    TC   FT+ ++  +  +  T   P+K DI
Sbjct: 459 RPYVCTTCGKSFTVISQLVMHNRSHTDERPYKCDI 493


>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2708

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 229  KKERKHTDLPIQILALEVLPFVLRRHLCSKSEPADSPLKP 110
            ++E+K  D P +  A +  P + RR      E +D+P KP
Sbjct: 2422 RQEKKTDDPPEEKQAEDEEPQIKRRRTLDSEEESDAPDKP 2461


>SB_29189| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 209 RPSNPNTCTGGFTICAEATLVLKERTSRFPFK 114
           RP   + C  GFT+ +  T  L+  T+  PF+
Sbjct: 28  RPFKCHICGKGFTLASTRTTHLRTHTNENPFQ 59


>SB_17939| Best HMM Match : zf-C2H2 (HMM E-Value=1e-22)
          Length = 203

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 209 RPSNPNTCTGGFTICAEATLVLKERTSRFPFK 114
           RP   + C  GFT+ +  T  L+  T+  PF+
Sbjct: 159 RPFKCHICGKGFTLASTRTTHLRTHTNEKPFQ 190


>SB_59790| Best HMM Match : VWA (HMM E-Value=0)
          Length = 4151

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 157 RHLCSKSEPADSPLKP 110
           +HLCSK  P  SP +P
Sbjct: 443 KHLCSKPGPIPSPTQP 458


>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2190

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 203 SNPNTCTGGFTICAEATLVLKERTS 129
           S PN C  GFTI     L + E TS
Sbjct: 38  SEPNRCKTGFTISFWVKLEISELTS 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,847,325
Number of Sequences: 59808
Number of extensions: 106844
Number of successful extensions: 221
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 16,821,457
effective HSP length: 55
effective length of database: 13,532,017
effective search space used: 297704374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)