Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f18
         (233 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80441-4|AAR25649.1|  228|Caenorhabditis elegans Atp synthase su...    46   4e-06
U80441-5|AAB37654.1|  207|Caenorhabditis elegans Atp synthase su...    45   8e-06
U40060-8|AAA81146.1|  218|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z77659-6|CAB01167.1|  401|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z29443-5|CAA82572.1|  182|Caenorhabditis elegans Hypothetical pr...    25   9.5  
U53344-3|AAA96224.1|  702|Caenorhabditis elegans Hypothetical pr...    25   9.5  
L26545-1|AAA20081.1|  182|Caenorhabditis elegans CYT-1 protein.        25   9.5  
AC024202-8|AAK93869.2|  816|Caenorhabditis elegans Hypothetical ...    25   9.5  

>U80441-4|AAR25649.1|  228|Caenorhabditis elegans Atp synthase
           subunit protein 3,isoform b protein.
          Length = 228

 Score = 46.0 bits (104), Expect = 4e-06
 Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
 Frame = +1

Query: 91  FLNKIMSALKGNLLVRSLSTS--VASAQMVKPPVQVFGLEGRYASALFS 231
           +L  +   +   L+ R  STS  +A AQ+VK P+QV G+EGRYA+AL+S
Sbjct: 13  YLTILHEKVMAQLMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYS 61


>U80441-5|AAB37654.1|  207|Caenorhabditis elegans Atp synthase
           subunit protein 3,isoform a protein.
          Length = 207

 Score = 44.8 bits (101), Expect = 8e-06
 Identities = 22/37 (59%), Positives = 29/37 (78%), Gaps = 2/37 (5%)
 Frame = +1

Query: 127 LLVRSLSTS--VASAQMVKPPVQVFGLEGRYASALFS 231
           L+ R  STS  +A AQ+VK P+QV G+EGRYA+AL+S
Sbjct: 4   LMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYS 40


>U40060-8|AAA81146.1|  218|Caenorhabditis elegans Hypothetical
           protein F38B6.2 protein.
          Length = 218

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 215 AYRPSNPNTCTGGFTICAEA 156
           A +P+NP TCTG    CA A
Sbjct: 58  ACKPNNPFTCTGRNPFCATA 77


>Z77659-6|CAB01167.1|  401|Caenorhabditis elegans Hypothetical
           protein F23B12.6 protein.
          Length = 401

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 182 GGFTICAEATLVLKER 135
           GG+T CA A+LVL  R
Sbjct: 237 GGYTFCAVASLVLLNR 252


>Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical protein
            F40F12.5 protein.
          Length = 1144

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -2

Query: 223  ERKHTDLPIQILALEVLPFVLRR-HLCSKSEPADSPLKPT*FYLKXYXHTSIIFFKTXGF 47
            ++K  D  + +  +++ PFV      CSK +       PT F  +   ++ +IF +    
Sbjct: 932  QQKVFDKILPLETIDITPFVAGAVPACSKCQACSEVYCPTCFLTRRVFYSEVIFCRKCFH 991

Query: 46   YRPVIP 29
            +  ++P
Sbjct: 992  HTHLLP 997


>Z29443-5|CAA82572.1|  182|Caenorhabditis elegans Hypothetical
           protein T07C4.7 protein.
          Length = 182

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 136 RSLSTSVASAQMVKPPVQVFGLE 204
           RS  TS+ +    K P+Q FG E
Sbjct: 20  RSFGTSIVTKSEAKTPIQKFGWE 42


>U53344-3|AAA96224.1|  702|Caenorhabditis elegans Hypothetical
           protein T07H6.4 protein.
          Length = 702

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = -2

Query: 232 LKKERKHTDLPIQILALEVLPFVLRRHLCSKSEP 131
           LK++   ++ P ++ +  + P+++RR+ CS   P
Sbjct: 457 LKRKMPTSNWPDKLTSRSIEPYIVRRNCCSVFVP 490


>L26545-1|AAA20081.1|  182|Caenorhabditis elegans CYT-1 protein.
          Length = 182

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 136 RSLSTSVASAQMVKPPVQVFGLE 204
           RS  TS+ +    K P+Q FG E
Sbjct: 20  RSFGTSIVTKSEAKTPIQKFGWE 42


>AC024202-8|AAK93869.2|  816|Caenorhabditis elegans Hypothetical
           protein Y71H2B.5 protein.
          Length = 816

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 97  NKIMSALKGNLLVRSLSTSVASAQMV 174
           N + SALK  LLV S  TSV  +Q V
Sbjct: 783 NSLRSALKPLLLVDSAHTSVMRSQAV 808


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,131,389
Number of Sequences: 27780
Number of extensions: 82396
Number of successful extensions: 164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 12,740,198
effective HSP length: 57
effective length of database: 11,156,738
effective search space used: 223134760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)