Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f16
         (591 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0)               172   2e-43
SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_11428| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   4e-05
SB_4471| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   7e-05
SB_29711| Best HMM Match : Peptidase_C1 (HMM E-Value=6.9e-06)          44   1e-04
SB_39998| Best HMM Match : Peptidase_C1 (HMM E-Value=0)                39   0.004
SB_56676| Best HMM Match : Peptidase_C1 (HMM E-Value=0.0027)           38   0.008
SB_17376| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.025
SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.033
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.057
SB_10126| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_15810| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_49433| Best HMM Match : DUF1327 (HMM E-Value=3.1)                   27   8.7  

>SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0)
          Length = 298

 Score =  172 bits (418), Expect = 2e-43
 Identities = 75/150 (50%), Positives = 102/150 (68%)
 Frame = +1

Query: 142 HPLSDEFINTINLKQNSWKAGRNFPRDTSFAHLKKIMGVIEDEHFATLPIKTHKIDLIAS 321
           +PLS E I+ IN    +WKAG+NF    +   +K++ G  +      LP++   +  +  
Sbjct: 28  NPLSMEAIDFINSLHTTWKAGKNFAEVYTIEDVKRLCGAKKGP---PLPLRKKLLISMDD 84

Query: 322 LPENFDPRDKWPDCPTLNEVRDQGSCGSCWAFGAVEAMTDRVCTYSNGTKHFHFSAEDLL 501
           +P++FD R++WP CPT+ EVRDQG+CGSCWAFGAVEAM+DR C +S G    H SAEDLL
Sbjct: 85  VPDHFDSREQWPHCPTIKEVRDQGACGSCWAFGAVEAMSDRYCIHSEGKVMPHISAEDLL 144

Query: 502 SCCPICGLGCSGGMPRLAWEYWKHFGLVSG 591
           SCC  CG+GC+GG P  AW++WK  GLV+G
Sbjct: 145 SCCETCGMGCNGGYPESAWDHWKSKGLVTG 174


>SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1512

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 4/153 (2%)
 Frame = +1

Query: 142 HPLSDEFINTINLKQNSWKAGRNFPRDTSFAHLKKIMGVIEDEH--FATLPIKTHKIDLI 315
           +P + E     ++ +++     N   D + A + ++ G++ +E       P      D  
Sbjct: 437 YPSAHEHEKRKDIYRHNMSLKPNHMADMTDAEVNRMKGLLHEEPPLIGDSPFSIPDKDRG 496

Query: 316 ASLPENFDPRDKWPDCPTLNEVRDQGSCGSCWAFGAVEAMTDRVCTYSNGTKHFHFSAED 495
             LP + D    W     +N V+ QG CGSC+AF AV    +       G K    S + 
Sbjct: 497 VPLPPHVD----WRKAGAVNSVKSQGICGSCYAF-AVAGALEGAHFIQTGLK-LDLSEQQ 550

Query: 496 LLSCCPICG-LGCSGGMPRLAWEY-WKHFGLVS 588
           ++ C    G  GC GG P  A ++  KH GL +
Sbjct: 551 IVDCTWGFGNRGCKGGYPYRAMQWILKHGGLAT 583


>SB_11428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 521

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +1

Query: 379 VRDQGSCGSCWAFGAVEAMTDRVCTYSNGTKHFHFSAEDLLSCCPICG-LGCSGGMPRLA 555
           V++QG CGSCWAF    ++  +   +    K    S ++L+ C    G  GC GG+   A
Sbjct: 348 VKNQGQCGSCWAFSTTGSLEGQ--NFKKTGKLVSLSEQNLVDCSTAYGNNGCQGGLMDYA 405

Query: 556 WEYWKHFG 579
           ++Y K  G
Sbjct: 406 FKYIKENG 413


>SB_4471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 331

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +1

Query: 352 WPDCPTLNEVRDQGSCGSCWAFGAVEAMTDRVCTYSNGTKHFHFSAEDLLSCCPICG-LG 528
           W     +  V++QG CGSCWAF    A+  +   +    K    S ++L+ C    G  G
Sbjct: 121 WRSKGYVTPVKNQGQCGSCWAFSTTGALEGQ--HFRKTGKLVSLSEQNLVDCSGKYGNNG 178

Query: 529 CSGGMPRLAWEYWKHFG 579
           C GG+   A++Y K  G
Sbjct: 179 CEGGLMDNAFQYIKENG 195


>SB_29711| Best HMM Match : Peptidase_C1 (HMM E-Value=6.9e-06)
          Length = 385

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
 Frame = +1

Query: 160 FINTINLKQNSWKAGRNFPRDTSFAHLKKIMGVIEDEHFATLPIKTHKIDLIASLPENFD 339
           +I ++N +   +K   N   D +    K   G ++DE    +      ID   +     D
Sbjct: 74  YIRSMNRRSLPYKLELNHFPDLTDDEFKSYKGALDDESKDVMNDHDDVIDDDVNDETQED 133

Query: 340 PRDKWPDCPTLNEVRDQGSCGSCWAF---GAVEA---MTDRVCTYSNGT 468
             D+ P    +N  + QG+CGSCWAF   GAVEA   + +  C  SN T
Sbjct: 134 EEDE-PSDGAVNPAKGQGTCGSCWAFATAGAVEAAHFIQEGFCKTSNLT 181


>SB_39998| Best HMM Match : Peptidase_C1 (HMM E-Value=0)
          Length = 1220

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 352 WPDCPTLNEVRDQGSCGSCWAFGAVEAMTDRVCTYSNGTKHFHFSAEDLLSCCPICG-LG 528
           W     +  V++QG CGSCWAF    ++  +   +         S ++L+ C    G  G
Sbjct: 49  WSQKGYVTGVKNQGQCGSCWAFSTTGSVEGQ--HFRKTGSLVSLSEQNLIDCSGSYGNNG 106

Query: 529 CSGGMPRLAWEY 564
           C GG+   A+ Y
Sbjct: 107 CQGGLMDNAFRY 118


>SB_56676| Best HMM Match : Peptidase_C1 (HMM E-Value=0.0027)
          Length = 295

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +1

Query: 292 KTHKIDLIASLPENFDPRDKWPD--CPTLNEVRDQGSCGSCWAFGAVEAMTDRVCTYSNG 465
           + H+   +A LP +FD RD        T         CGSCWA G   AM DR+     G
Sbjct: 41  RPHEYLNMAKLPTSFDWRDVNGTNYASTTRNQHIPQYCGSCWAHGTTSAMADRINILRKG 100

Query: 466 TKH 474
             H
Sbjct: 101 KWH 103


>SB_17376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 388 QGSCGSCWAFGAVEAMTDRVCTYSNGTKHFHFSAEDLLSCCPICG-LGCSGGMPRLAWEY 564
           Q  CGSCWAF +  ++  +   +    K    S ++L+ C    G  GC GG+   A++Y
Sbjct: 342 QCQCGSCWAFSSTGSLEGQ--HFRKTGKLVSLSEQNLVDCSKKYGNNGCEGGLMDYAFKY 399

Query: 565 WK 570
            K
Sbjct: 400 IK 401


>SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +1

Query: 370 LNEVRDQGSCGSCWAFGAVEAMTDRVCTYSNGTKHFHFSAEDLLSCCPICG-LGCSGGM- 543
           ++ VR QG CGSC+A  AV A+       +   K    SA+ ++ C    G  GC GG  
Sbjct: 324 VSPVRGQGICGSCYALAAVGAVEGAYFMKTGKLK--ELSAQQVIDCSWGSGNRGCKGGYY 381

Query: 544 -PRLAWEY 564
              ++W Y
Sbjct: 382 NKAMSWIY 389


>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 859

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 3/138 (2%)
 Frame = +1

Query: 160 FINTINLKQNSWKAGRNFPRDTSFAHLKKIMGVIEDEHF-ATLPIKTHKIDLIASLPENF 336
           FI++ N +   +    N   D S   L+ + G    + +   LP K      I  +P+  
Sbjct: 586 FIHSKNRRHAGYYLAMNHLGDRSDKELRVLRGRRYTKGYNGGLPYKPDMAS-INDVPDEM 644

Query: 337 DPRDKWPDCPTLNEVRDQGSCGSCWAFGAVEAMTDRVCTYSNGTKHF-HFSAEDLLSCCP 513
           +    W     +  V+DQ  CGSCW+FG    +     T    TK+    S ++L+ C  
Sbjct: 645 N----WVIRGAVTPVKDQAVCGSCWSFGTTGTIEG---TLFLKTKYLTRLSQQNLMDCSW 697

Query: 514 ICG-LGCSGGMPRLAWEY 564
             G   C GG    +++Y
Sbjct: 698 GEGNNACDGGEDFRSYQY 715


>SB_10126| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = -2

Query: 350 LSLGSKFSGRLAIKSIL*VFIGRVAKCSSSITPIIFLRCANDVSRGKLRPAFQLFCFRLI 171
           +SL + F G   I  ++      +AK S+   PII+          K R AFQ F F+ +
Sbjct: 246 VSLYASFGGVTTIPKLMSTLPAMLAKTSACYNPIIYF-----FMYSKFRKAFQRFFFKNV 300

Query: 170 VLMNSSE 150
           +  + +E
Sbjct: 301 ITPSQTE 307


>SB_15810| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/68 (29%), Positives = 34/68 (50%)
 Frame = -2

Query: 428 STAPKAQQLPQDP*SLTSFNVGQSGHLSLGSKFSGRLAIKSIL*VFIGRVAKCSSSITPI 249
           +T    + +P+   SLT++    SG+L  GS      ++   L      + K S ++ PI
Sbjct: 110 ATVQCLRNVPELHDSLTNY----SGNLGFGSDIGSPESVTVALRDLFKTMDKTSEAVPPI 165

Query: 248 IFLRCAND 225
           IFL+ AN+
Sbjct: 166 IFLQDANE 173


>SB_49433| Best HMM Match : DUF1327 (HMM E-Value=3.1)
          Length = 728

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +1

Query: 292 KTHKIDLIASLPENFDPRDKWPDCPTLNEVRDQGSCGSCWAFGAVEAMTDRVCTYSNG 465
           KTH ID  A++PE+          P+ +E   QG        G  + +T  V  +S G
Sbjct: 336 KTHLIDYCAAVPEHMAELPSSVIQPSQDEPSPQGPMTEMLPKGNTDVVTTLVTDFSEG 393


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,135,471
Number of Sequences: 59808
Number of extensions: 392841
Number of successful extensions: 926
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)