Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f15
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   3.5  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    26   3.5  
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept...    26   4.7  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   6.2  

>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 194  EHNQDVCLTEIRWGSTPYWSQGAKKQYYISK 286
            +HN+  CL  I++   P  S+   K +Y SK
Sbjct: 1571 QHNESACLLSIQYRMNPEISRFPSKFFYNSK 1601


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 7/16 (43%), Positives = 15/16 (93%)
 Frame = +2

Query: 2   IGLSWLCMLGRAQING 49
           +GL+WLC++ +A+++G
Sbjct: 420 VGLNWLCLMYKAKLSG 435


>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 88  NENSCTFGHFEEKTVNLCPT 29
           N N C F  FE KT++ CPT
Sbjct: 179 NLNDCAF-FFEWKTIHACPT 197


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 233 GSTPYWSQGAKKQYYISKSCSNKTECPK 316
           GS P W    +  Y+ S+  S  + CPK
Sbjct: 916 GSGPIWQLKKENNYWESRENSTWSSCPK 943


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,592
Number of Sequences: 5004
Number of extensions: 51735
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)