Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f12
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2073| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.3  
SB_38399| Best HMM Match : DUF81 (HMM E-Value=3.6)                     29   4.0  
SB_52854| Best HMM Match : I-set (HMM E-Value=0.22)                    28   5.3  
SB_17020| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_17770| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_8401| Best HMM Match : ig (HMM E-Value=8.1e-22)                     27   9.2  

>SB_2073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 138 CELKRYNHVFDEAGENTHYHSDSDSVASRKSKT 236
           CE   YNH+ DE GEN+ Y    DS  + + +T
Sbjct: 362 CEFPLYNHLKDEPGENS-YIKQQDSSGTSQPQT 393


>SB_38399| Best HMM Match : DUF81 (HMM E-Value=3.6)
          Length = 388

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 469 HLVTIVLIVKMGLTLFDYPWHL 534
           H+V I++I+ + +T  DYP+H+
Sbjct: 327 HMVAIIIIITIIITSSDYPYHM 348



 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 469 HLVTIVLIVKMGLTLFDYPWHL 534
           H+V I++I  + +T  DYP+H+
Sbjct: 21  HMVAIIIITTIIITSSDYPYHM 42


>SB_52854| Best HMM Match : I-set (HMM E-Value=0.22)
          Length = 144

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 337 HTAITGVIRPHS*VDGIRVYLQQV*KENLVHYWEVT 444
           HTA+ G IR  S  + I   LQ     N+  YW++T
Sbjct: 7   HTALVGAIRITSKPEDITKVLQGTLNYNVSWYWDIT 42


>SB_17020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 957

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +1

Query: 415  ENLVHYWEVTFKFI*MKTHLVTIVLIVKMGLTLFDYPWHLFLRPQ 549
            +NL H W+   + I +K ++ +  L + +   L+ + W +  RPQ
Sbjct: 882  KNLHHCWQKHGETIVVKQNVASFFLFLVVNRALYCFAWSVCTRPQ 926


>SB_17770| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 187

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 441 HIQVYIDEDTPRNDRTYREDGPDTFRLSV 527
           H+QV  D   PR+ R   E GP  F  +V
Sbjct: 147 HLQVSYDTSAPRSSRNCPEGGPGVFTNTV 175


>SB_8401| Best HMM Match : ig (HMM E-Value=8.1e-22)
          Length = 965

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 337 HTAITGVIRPHS*VDGIRVYLQQV*KENLVHYWEVT 444
           HTA+ G IR  S  + I   LQ     N+  YW +T
Sbjct: 588 HTALVGAIRITSKPEDITKVLQGTLNYNVSWYWNIT 623


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,546,369
Number of Sequences: 59808
Number of extensions: 381798
Number of successful extensions: 1052
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)