Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f09
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    27   1.6  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    26   5.0  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   5.0  
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    25   6.6  
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.8  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    25   8.8  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   8.8  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    25   8.8  

>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 503 SKQIKRMISSYVGENAEFERQFLSGELE 586
           S++I  MIS+ VG NAE +   L+ EL+
Sbjct: 137 SEEISTMISTPVGLNAEIDEDELANELD 164


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1429

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = +2

Query: 326  AQEVVQDVSDGSKLLVGGFGLCGIPENLIKALNIKKVSALTVVSNNAGVEDFGLGILLKS 505
            A   +   + G+KL+VGG G  G    L     I  V +  V     GV   G  I+  +
Sbjct: 1208 ADNFLHAANKGAKLVVGGVGAAG-GLALAGVTTIGSVGSKAVTGVADGVTGTGKHIISGA 1266

Query: 506  KQIKRM 523
            K I +M
Sbjct: 1267 KGISKM 1272


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 428 KKVSALTVVSNNAGVEDFGLG 490
           K  S L+  + NAGV DFGLG
Sbjct: 764 KSQSMLSANNLNAGVNDFGLG 784


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +2

Query: 386 LCGIPENLIKALNIKKVSALTVVSNNAGVEDFGLGILLKSKQIKRMISSYVGENAE 553
           L  + EN+  + + +  ++L  V+N+    D GLG  L +  I + I++ V  N +
Sbjct: 342 LSDVDENISTSSSPRSPASLAPVNNSERSYDSGLGESLNNMHIGKSIATAVPVNTK 397


>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 193 FIYHDSKYKKTIRCQLFKACEFHWKDKKLCDLC 291
           ++ H SK +   R +LF+    H K+ + C++C
Sbjct: 227 YVEHQSKKR---RLELFQLTNNHQKNSEACEMC 256


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 150 TVLFLDEVKELLANTRVKLRTCFKIMFKKYVNINKNKDSFVCIKLI 13
           TVL   +   L  ++ V LRT   +++ KY N +K KD F    +I
Sbjct: 507 TVLEHAKHPSLAKHSGVSLRTGL-LIYPKYANGSKRKDGFGATSII 551


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 316 YFAFTNNCGISRTTFYLSNGIHKL*IIG 233
           +F F N+ GIS +  Y+   IH + + G
Sbjct: 556 FFVFCNSFGISSSKLYIKKMIHLIWVKG 583


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
          subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +2

Query: 2  TQNIISLIQTNESLFLLMLTYFLNI 76
          ++ + ++  +NESL+LL  ++FLN+
Sbjct: 25 SERLHAIEDSNESLYLLAYSHFLNL 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,275,535
Number of Sequences: 5004
Number of extensions: 41656
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)