Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8f09
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48178-4|CAA88202.1|  521|Caenorhabditis elegans Hypothetical pr...   152   2e-37
AF106581-7|ABC48241.1|  362|Caenorhabditis elegans Nuclear hormo...    34   0.093
U39472-10|AAZ82853.1|  354|Caenorhabditis elegans Serpentine rec...    29   3.5  
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ...    28   4.6  

>Z48178-4|CAA88202.1|  521|Caenorhabditis elegans Hypothetical
           protein C05C10.3 protein.
          Length = 521

 Score =  152 bits (369), Expect = 2e-37
 Identities = 70/104 (67%), Positives = 89/104 (85%)
 Frame = +2

Query: 305 KSKIYASAQEVVQDVSDGSKLLVGGFGLCGIPENLIKALNIKKVSALTVVSNNAGVEDFG 484
           K+K++ SA+E V+D+ D +KLLVGGFGLCGIPENLI+A+       LT VSNNAGV+++G
Sbjct: 36  KAKVFNSAEEAVKDIPDNAKLLVGGFGLCGIPENLIQAITKTGQKGLTCVSNNAGVDNWG 95

Query: 485 LGILLKSKQIKRMISSYVGENAEFERQFLSGELEVELTPQGTLA 616
           LG+LL+++QIK+MISSYVGEN EF RQ+LSGELE+E TPQGTLA
Sbjct: 96  LGLLLQTRQIKKMISSYVGENGEFARQYLSGELELEFTPQGTLA 139


>AF106581-7|ABC48241.1|  362|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 135 protein.
          Length = 362

 Score = 33.9 bits (74), Expect = 0.093
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 217 KKTIRCQLFKACEFHWKDKKLCDLC 291
           K  I+C+  K+C  H+KD K+C  C
Sbjct: 40  KSAIKCRKDKSCRIHYKDPKICRFC 64


>U39472-10|AAZ82853.1|  354|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 36 protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 349 YILNYFLSTGIYFAFTNNCGISRT 278
           Y +NY++   IYFAFT N  + R+
Sbjct: 71  YCMNYYIFHDIYFAFTMNWSLYRS 94


>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
           protein Y80D3A.8 protein.
          Length = 1293

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
 Frame = +2

Query: 185 VSLSFIMTLNIRKLLDANYSKLVNSIGKIKSCATYATI-IRKSKIYASAQEVVQDVSDGS 361
           + +S     N+  LLD     L +SI ++KS      + I KS   +  Q +    +D  
Sbjct: 631 IGISASALRNVFSLLD-----LESSINQLKSVDGIVKVGIDKSSNKSELQSLWGSHNDDI 685

Query: 362 KLLVGGFGLCGIPENLIKALNIKKVSAL-TVVSNNAGVEDFGLGILLKSKQIKRMISSYV 538
             L G      + ++ I     K +S+  T + N A + D  +  + KSK ++ +ISS V
Sbjct: 686 ISLEGAIAKSKVFKSKIDVSKAKTLSSYSTPLQNLASIPDVKIDAVKKSKALEILISSLV 745

Query: 539 GENAE 553
             + +
Sbjct: 746 ASSVK 750


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,347,689
Number of Sequences: 27780
Number of extensions: 225690
Number of successful extensions: 653
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)